Description

Methods defined for S4 class Coutput.

Usage

show(object)

ratio(x)

zscore(x)

pvalue(x)

adjp(x)

cnetwork(x)

write(x, file = "Coutput.txt", saveBy = c("adjp", "pvalue", "zscore", "ratio"), verbose = T)

Arguments

object

an object of S4 class Coutput. Usually this is an output from dcRWRpipeline

x

an object of S4 class Coutput. Usually this is part of the output from dcRWRpipeline

file

a character specifying a file name written into. By default, it is 'Coutput.txt'

saveBy

which statistics will be saved. It can be "pvalue" for p value, "adjp" for adjusted p value, "zscore" for z-score, "ratio" for ratio

verbose

logical to indicate whether the messages will be displayed in the screen. By default, it sets to true for display

Value

write(x) also returns a symmetrix matrix storing the specific statistics

See also

Coutput-class