InterPro domains (InterPro).


An object of class "InfoDataFrame" that contains information on InterPro domains (InterPro). This data is prepared based on




an object of class InfoDataFrame. It has slots for data and dimLabels:

  • data: a data.frame containing information about 11638 annotatable domains (in rows), with 3 columns ("id" for InterPro ID, and "level" always equals "InterPro", "description" for InterPro description)
  • dimLabels: a character describing labels for rows and columns in data


Hunter et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res, 40(Database issue):D306-12.


# load data data(InterPro) InterPro
An object of S4 class 'InfoDataFrame' rowNames: IPR000003 IPR000006 IPR000008 ... IPR029784 IPR029785 (11638 total) colNames: id level description
# retrieve the dimension dim(InterPro)
[1] 11638 3
# retrieve names of columns colNames(InterPro)
[1] "id" "level" "description"
# retrieve the first 5 rows of data Data(InterPro)[1:5,]
id level description IPR000003 IPR000003 InterPro Retinoid X receptor/HNF4 IPR000006 IPR000006 InterPro Metallothionein, vertebrate IPR000008 IPR000008 InterPro C2 domain IPR000009 IPR000009 InterPro Protein phosphatase 2A, regulatory subunit PR55 IPR000010 IPR000010 InterPro Proteinase inhibitor I25, cystatin