id level description RF00001 Rfam 5S ribosomal RNA RF00002 Rfam 5.8S ribosomal RNA RF00003 Rfam U1 spliceosomal RNA RF00004 Rfam U2 spliceosomal RNA RF00006 Rfam Vault RNA RF00007 Rfam U12 minor spliceosomal RNA RF00008 Rfam Hammerhead ribozyme (type III) RF00009 Rfam Nuclear RNase P RF00010 Rfam Bacterial RNase P class A RF00011 Rfam Bacterial RNase P class B RF00012 Rfam Small nucleolar RNA U3 RF00013 Rfam 6S / SsrS RNA RF00014 Rfam DsrA RNA RF00015 Rfam U4 spliceosomal RNA RF00016 Rfam Small nucleolar RNA SNORD14 RF00017 Rfam Metazoan signal recognition particle RNA RF00018 Rfam CsrB/RsmB RNA family RF00019 Rfam Y RNA RF00020 Rfam U5 spliceosomal RNA RF00021 Rfam Spot 42 RNA RF00022 Rfam GcvB RNA RF00023 Rfam transfer-messenger RNA RF00024 Rfam Vertebrate telomerase RNA RF00025 Rfam Ciliate telomerase RNA RF00026 Rfam U6 spliceosomal RNA RF00027 Rfam let-7 microRNA precursor RF00028 Rfam Group I catalytic intron RF00029 Rfam Group II catalytic intron RF00030 Rfam RNase MRP RF00031 Rfam Selenocysteine insertion sequence 1 RF00032 Rfam Histone 3' UTR stem-loop RF00033 Rfam MicF RNA RF00034 Rfam RprA RNA RF00035 Rfam OxyS RNA RF00036 Rfam HIV Rev response element RF00037 Rfam Iron response element I RF00038 Rfam PrfA thermoregulator UTR RF00039 Rfam DicF RNA RF00040 Rfam RNase E 5' UTR element RF00041 Rfam Enteroviral 3' UTR element RF00042 Rfam CopA-like RNA RF00043 Rfam R1162-like plasmid antisense RNA RF00044 Rfam Bacteriophage pRNA RF00045 Rfam Small nucleolar RNA SNORA73 family RF00046 Rfam Small nucleolar RNA R30/Z108 RF00047 Rfam mir-2 microRNA precursor RF00048 Rfam Enterovirus cis-acting replication element RF00049 Rfam Small nucleolar RNA SNORD36 RF00050 Rfam FMN riboswitch (RFN element) RF00051 Rfam mir-17 microRNA precursor family RF00052 Rfam lin-4 microRNA precursor RF00053 Rfam mir-7 microRNA precursor RF00054 Rfam Small nucleolar RNA SNORD25 RF00055 Rfam Small nucleolar RNA SNORD96 family RF00056 Rfam Small nucleolar RNA SNORA71 RF00057 Rfam RyhB RNA RF00058 Rfam HgcF RNA RF00059 Rfam TPP riboswitch (THI element) RF00060 Rfam HgcE RNA RF00061 Rfam Hepatitis C virus internal ribosome entry site RF00062 Rfam HgcC family RNA RF00063 Rfam SscA RNA RF00064 Rfam HgcG RNA RF00065 Rfam Small nucleolar RNA snoR9 RF00066 Rfam U7 small nuclear RNA RF00067 Rfam Small nucleolar RNA SNORD15 RF00068 Rfam Small nucleolar RNA SNORD21 RF00069 Rfam Small nucleolar RNA SNORD24 RF00070 Rfam Small nucleolar RNA SNORD29 RF00071 Rfam Small nucleolar RNA SNORD73 RF00072 Rfam Small nucleolar RNA SNORA75 RF00073 Rfam mir-156 microRNA precursor RF00074 Rfam mir-29 microRNA precursor RF00075 Rfam mir-166 microRNA precursor RF00076 Rfam mir-181 microRNA precursor RF00077 Rfam SraB RNA RF00078 Rfam MicA sRNA RF00079 Rfam OmrA-B family RF00080 Rfam yybP-ykoY leader RF00081 Rfam ArcZ RNA RF00082 Rfam SraG RNA RF00083 Rfam GlmZ RNA activator of glmS mRNA RF00084 Rfam CsrC RNA family RF00085 Rfam Small nucleolar RNA SNORD28 RF00086 Rfam Small nucleolar RNA SNORD27 RF00087 Rfam Small nucleolar RNA SNORD26 RF00088 Rfam Small nucleolar RNA SNORD30 RF00089 Rfam Small nucleolar RNA SNORD31 RF00090 Rfam Small nucleolar RNA SNORA74 RF00091 Rfam Small nucleolar RNA SNORA62/SNORA6 family RF00092 Rfam Small nucleolar RNA SNORA63 RF00093 Rfam Small nucleolar RNA SNORD18 RF00094 Rfam Hepatitis delta virus ribozyme RF00095 Rfam Pyrococcus C/D box small nucleolar RNA RF00096 Rfam U8 small nucleolar RNA RF00097 Rfam Plant small nucleolar RNA R71 RF00099 Rfam Small nucleolar RNA SNORD22 RF00100 Rfam 7SK RNA RF00101 Rfam SraC/RyeA RNA RF00102 Rfam VA RNA RF00103 Rfam mir-1 microRNA precursor family RF00104 Rfam mir-10 microRNA precursor family RF00105 Rfam Small nucleolar RNA SNORD115 RF00106 Rfam RNAI RF00107 Rfam FinP RF00108 Rfam Small nucleolar RNA SNORD116 RF00109 Rfam Vimentin 3' UTR protein-binding region RF00110 Rfam RybB RNA RF00111 Rfam RyeB RNA RF00112 Rfam CyaR/Rye RNA RF00113 Rfam QUAD RNA RF00114 Rfam Ribosomal S15 leader RF00115 Rfam IS061 RNA RF00116 Rfam C0465 RNA RF00117 Rfam C0719 RNA RF00118 Rfam rydB RNA RF00119 Rfam C0299 RNA RF00121 Rfam MicC RNA RF00122 Rfam GadY RF00124 Rfam IS102 RNA RF00125 Rfam IS128 RNA RF00126 Rfam ryfA RNA RF00128 Rfam Glm Y RNA activator of glmS mRNA RF00129 Rfam mir-103/107 microRNA precursor RF00130 Rfam mir-192/215 microRNA precursor RF00131 Rfam mir-30 microRNA precursor RF00132 Rfam Small nucleolar RNA R24 RF00133 Rfam Small nucleolar RNA Z195/SNORD33/SNORD32 family RF00134 Rfam Small nucleolar RNA Z196/R39/R59 family RF00135 Rfam Small nucleolar RNA Z223 RF00136 Rfam Small nucleolar RNA SNORD81 RF00137 Rfam Small nucleolar RNA SNORD83 RF00138 Rfam Small nucleolar RNA SNORD16 RF00139 Rfam Small nucleolar RNA SNORA72 RF00140 Rfam Alpha operon ribosome binding site RF00142 Rfam Small nucleolar RNA Z118/Z121/Z120 RF00143 Rfam mir-6 microRNA precursor RF00144 Rfam mir-199 microRNA precursor RF00145 Rfam Small nucleolar RNA Z105 RF00147 Rfam Small nucleolar RNA SNORD34 RF00149 Rfam Small nucleolar RNA Z103 RF00150 Rfam Small nucleolar RNA SNORD42 RF00151 Rfam Small nucleolar RNA SNORD58 RF00152 Rfam Small nucleolar RNA SNORD79 RF00153 Rfam Small nucleolar RNA SNORD62 RF00154 Rfam Small nucleolar RNA SNORD63 RF00155 Rfam Small nucleolar RNA SNORA66 RF00156 Rfam Small nucleolar RNA SNORA70 RF00157 Rfam Small nucleolar RNA SNORD55/SNORD39 RF00158 Rfam Small nucleolar RNA SNORD82 RF00159 Rfam Small nucleolar RNA Z168/Z174 RF00160 Rfam Small nucleolar RNA Z159/U59 RF00161 Rfam Nanos 3' UTR translation control element RF00162 Rfam SAM riboswitch (S box leader) RF00163 Rfam Hammerhead ribozyme (type I) RF00164 Rfam Coronavirus 3' stem-loop II-like motif (s2m) RF00165 Rfam Coronavirus 3' UTR pseudoknot RF00166 Rfam PrrB/RsmZ RNA family RF00167 Rfam Purine riboswitch RF00168 Rfam Lysine riboswitch RF00169 Rfam Bacterial small signal recognition particle RNA RF00170 Rfam Retron msr RNA RF00171 Rfam Tombusvirus 5' UTR RF00172 Rfam ctgf/hcs24 CAESAR RF00173 Rfam Hairpin ribozyme RF00174 Rfam Cobalamin riboswitch RF00175 Rfam Human immunodeficiency virus type 1 dimerisation initiation site RF00176 Rfam Tombusvirus 3' UTR region IV RF00178 Rfam mir-24 microRNA precursor family RF00179 Rfam GAIT element RF00180 Rfam Renin stability regulatory element (REN-SRE) RF00181 Rfam Small nucleolar RNA SNORD113/SNORD114 family RF00182 Rfam Coronavirus packaging signal RF00183 Rfam G-CSF factor stem-loop destabilising element (SLDE) RF00184 Rfam Potato virus X cis-acting regulatory element RF00185 Rfam Flavivirus 3' UTR cis-acting replication element (CRE) RF00186 Rfam Small nucleolar RNA SNORD101 RF00187 Rfam Small nucleolar RNA SNORD102 RF00188 Rfam Small nucleolar RNA SNORD103/SNORD85 RF00189 Rfam Small nucleolar RNA SNORD95 RF00190 Rfam Small nucleolar RNA SNORA16B/SNORA16A family RF00191 Rfam Small nucleolar RNA SNORA57 RF00192 Rfam Bovine leukaemia virus RNA packaging signal RF00193 Rfam Citrus tristeza virus replication signal RF00194 Rfam Rubella virus 3' cis-acting element RF00195 Rfam RsmY RNA family RF00196 Rfam Alfalfa mosaic virus RNA 1 5' UTR stem-loop RF00198 Rfam SL1 RNA RF00199 Rfam SL2 RNA RF00200 Rfam Small nucleolar RNA Z199 RF00201 Rfam Small nucleolar RNA Z278 RF00202 Rfam Small nucleolar RNA R66 RF00203 Rfam Small nucleolar RNA R160 RF00204 Rfam Small nucleolar RNA R12 RF00205 Rfam Small nucleolar RNA R41 RF00206 Rfam Small nucleolar RNA U54 RF00207 Rfam K10 transport/localisation element (TLS) RF00208 Rfam Small nucleolar RNA R72 RF00209 Rfam Pestivirus internal ribosome entry site (IRES) RF00210 Rfam Aphthovirus internal ribosome entry site (IRES) RF00211 Rfam Small nucleolar RNA SNORD35 RF00212 Rfam Small nucleolar RNA SNORD38 RF00213 Rfam Small nucleolar RNA R38 RF00214 Rfam Retrovirus direct repeat 1 (dr1) RF00215 Rfam Tombus virus defective interfering (DI) RNA region 3 RF00216 Rfam c-myc internal ribosome entry site (IRES) RF00217 Rfam Small nucleolar RNA SNORD20 RF00218 Rfam Small nucleolar RNA SNORD46 RF00220 Rfam Human rhinovirus internal cis-acting regulatory element (CRE) RF00221 Rfam Small nucleolar RNA SNORD43 RF00222 Rfam Bag-1 internal ribosome entry site (IRES) RF00223 Rfam bip internal ribosome entry site (IRES) RF00224 Rfam FGF-2 internal ribosome entry site (IRES) RF00225 Rfam Tobamovirus internal ribosome entry site (IRES) RF00226 Rfam n-myc internal ribosome entry site (IRES) RF00227 Rfam FIE3 (ftz instability element 3') element RF00228 Rfam Hepatitis A virus internal ribosome entry site (IRES) RF00229 Rfam Picornavirus internal ribosome entry site (IRES) RF00230 Rfam T-box leader RF00231 Rfam Small Cajal body specific RNA 13 RF00232 Rfam Spi-1 (PU.1) 5' UTR regulatory element RF00233 Rfam Tymovirus/Pomovirus tRNA-like 3' UTR element RF00234 Rfam glmS glucosamine-6-phosphate activated ribozyme RF00235 Rfam Plasmid RNAIII RF00236 Rfam ctRNA RF00237 Rfam mir-9/mir-79 microRNA precursor family RF00238 Rfam ctRNA RF00239 Rfam mir-124 microRNA precursor family RF00240 Rfam RNA-OUT RF00241 Rfam mir-8/mir-141/mir-200 microRNA precursor family RF00242 Rfam ctRNA RF00243 Rfam traJ 5' UTR RF00244 Rfam mir-26 microRNA precursor family RF00245 Rfam mir-19 microRNA precursor family RF00246 Rfam mir-135 microRNA precursor family RF00247 Rfam mir-160 microRNA precursor family RF00248 Rfam mir-148/mir-152 microRNA precursor family RF00249 Rfam mir-46/mir-47/mir-281 microRNA precursor family RF00250 Rfam Trans-activation response element (TAR) RF00251 Rfam mir-219 microRNA precursor family RF00252 Rfam Alfalfa mosaic virus coat protein binding (CPB) RNA RF00253 Rfam mir-101 microRNA precursor family RF00254 Rfam mir-16 microRNA precursor family RF00255 Rfam mir-218 microRNA precursor family RF00256 Rfam mir-196 microRNA precursor family RF00257 Rfam mir-194 microRNA precursor family RF00258 Rfam mir-130 microRNA precursor family RF00259 Rfam Interferon gamma 5' UTR regulatory element RF00260 Rfam Hepatitis C virus (HCV) cis-acting replication element (CRE) RF00261 Rfam L-myc internal ribosome entry site (IRES) RF00262 Rfam sar RNA RF00263 Rfam Small nucleolar RNA SNORA68 RF00264 Rfam Small nucleolar RNA SNORA64/SNORA10 family RF00265 Rfam Small nucleolar RNA SNORA69 RF00266 Rfam Small nucleolar RNA Z17 RF00267 Rfam Small nucleolar RNA R64/Z200 family RF00268 Rfam Small nucleolar RNA snoZ7/snoR77 RF00270 Rfam Small nucleolar RNA SNORD61 RF00271 Rfam Small nucleolar RNA SNORD60 RF00272 Rfam Small nucleolar RNA SNORA67 RF00273 Rfam Small nucleolar RNA SNORD59 RF00274 Rfam Small nucleolar RNA SNORD57 RF00275 Rfam Small nucleolar RNA SNORD56 RF00276 Rfam Small nucleolar RNA SNORD52 RF00277 Rfam Small nucleolar RNA SNORD49 RF00278 Rfam Small nucleolar RNA SNORD50 RF00279 Rfam Small nucleolar RNA SNORD45 RF00280 Rfam Small nucleolar RNA SNORD51 RF00281 Rfam Small nucleolar RNA SNORD47 RF00282 Rfam Small nucleolar RNA SNORD48 RF00283 Rfam small Cajal body-specific RNA 18 RF00284 Rfam Small nucleolar RNA SNORD74 RF00285 Rfam Z6 small nucleolar RNA RF00286 Rfam Small Cajal body specific RNA 8 RF00287 Rfam Small nucleolar RNA SNORD44 RF00288 Rfam Z30 small nucleolar RNA RF00289 Rfam Small nucleolar RNA SNORD104 RF00290 Rfam Bamboo mosaic potexvirus (BaMV) cis-regulatory element RF00291 Rfam Small nucleolar RNA snoR639/H1 RF00292 Rfam Small nucleolar RNA TBR5 RF00293 Rfam Small nucleolar RNA snoM1 RF00294 Rfam Small nucleolar RNA TBR17 RF00295 Rfam Small nucleolar RNA TBR7 RF00296 Rfam Small nucleolar RNA R16 RF00300 Rfam Small nucleolar RNA Z221/R21b RF00301 Rfam Small nucleolar RNA Z256 RF00302 Rfam Small nucleolar RNA SNORA65 RF00303 Rfam Small nucleolar RNA snoR86 RF00304 Rfam Small nucleolar RNA Z279/snoR105/snoR108 RF00305 Rfam Small nucleolar RNA Z248 RF00306 Rfam Small nucleolar RNA Z178 RF00307 Rfam Small nucleolar RNA snoR98 RF00309 Rfam Small nucleolar RNA snR60/Z15/Z230/Z193/J17 RF00310 Rfam Small nucleolar RNA Z165 RF00311 Rfam Small nucleolar RNA Z188 RF00312 Rfam Small nucleolar RNA Z206 RF00313 Rfam Small nucleolar RNA Z173 RF00314 Rfam Small nucleolar RNA Z182 RF00315 Rfam Small nucleolar RNA J33 RF00316 Rfam Small nucleolar RNA R43 RF00317 Rfam Small nucleolar RNA Z163/Z177 family RF00318 Rfam Small nucleolar RNA Z175 RF00319 Rfam Small nucleolar RNA SNORA23 RF00320 Rfam Small nucleolar RNA Z185 RF00321 Rfam Small nucleolar RNA Z247 RF00322 Rfam Small nucleolar RNA SNORA31 RF00323 Rfam Small nucleolar RNA R79 RF00324 Rfam Small nucleolar RNA MBII-202 RF00325 Rfam Small nucleolar RNA SNORD53/SNORD92 RF00326 Rfam Small nucleolar RNA Z155 RF00327 Rfam Small nucleolar RNA Z194 RF00328 Rfam Small nucleolar RNA Z161/Z228 RF00329 Rfam Small nucleolar RNA Z162 RF00330 Rfam Small nucleolar RNA Z43 RF00331 Rfam Small nucleolar RNA Z169 RF00332 Rfam Small nucleolar RNA Z266 RF00333 Rfam Small nucleolar RNA Z157/R69/R10 RF00334 Rfam Small nucleolar RNA SNORA3/SNORA45 family RF00335 Rfam Small nucleolar RNA Z13/snr52 RF00336 Rfam Small nucleolar RNA J26 RF00337 Rfam Small nucleolar RNA Z112 RF00338 Rfam Small nucleolar RNA snR53 RF00339 Rfam Small nucleolar RNA snoR60 RF00340 Rfam Small nucleolar RNA SNORA36 family RF00341 Rfam Small nucleolar RNA Z39 RF00342 Rfam Small nucleolar RNA Z40 RF00343 Rfam Small nucleolar RNA Z122 RF00344 Rfam Small nucleolar RNA Z267 RF00345 Rfam Small nucleolar RNA snoR1 RF00348 Rfam Small nucleolar RNA snoR9 RF00349 Rfam Small nucleolar RNA R11/Z151 RF00350 Rfam Small nucleolar RNA Z152/R70/R12/ RF00351 Rfam Small nucleolar RNA R20 RF00352 Rfam Small nucleolar RNA R21 RF00353 Rfam Small nucleolar RNA snoR31/Z110/Z27 RF00355 Rfam Small nucleolar RNA snoR28 RF00356 Rfam Small nucleolar RNA R32/R81/Z41 RF00357 Rfam Small nucleolar RNA R44/J54/Z268 family RF00358 Rfam Small nucleolar RNA Z101 RF00359 Rfam Small nucleolar RNA Z102/R77 RF00360 Rfam Small nucleolar RNA Z107/R87 RF00361 Rfam Small nucleolar RNA Z119 RF00362 Rfam Pospiviroid RY motif stem loop RF00363 Rfam mir-BART1 microRNA precursor family RF00364 Rfam mir-BART2 microRNA precursor family RF00365 Rfam mir-BHRF1-1 microRNA precursor family RF00366 Rfam mir-BHRF1-2 microRNA precursor family RF00367 Rfam mir-BHRF1-3 microRNA precursor family RF00368 Rfam sroB RNA RF00369 Rfam sroC RNA RF00370 Rfam sroD RNA RF00371 Rfam sroE RNA RF00372 Rfam sroH RNA RF00373 Rfam Archaeal RNase P RF00374 Rfam Gammaretrovirus core encapsidation signal RF00375 Rfam HIV primer binding site (PBS) RF00376 Rfam HIV gag stem loop 3 (GSL3) RF00377 Rfam Small nucleolar RNA U6-53/MBII-28 RF00378 Rfam Qrr RNA RF00379 Rfam ydaO/yuaA leader RF00380 Rfam ykoK leader RF00381 Rfam Antizyme RNA frameshifting stimulation element RF00382 Rfam DnaX ribosomal frameshifting element RF00383 Rfam Insertion sequence IS1222 ribosomal frameshifting element RF00384 Rfam Poxvirus AX element late mRNA cis-regulatory element RF00385 Rfam Infectious bronchitis virus D-RNA RF00386 Rfam Enterovirus 5' cloverleaf cis-acting replication element RF00387 Rfam FGF-1 internal ribosome entry site (IRES) RF00388 Rfam Anti-Q RNA RF00389 Rfam Bamboo mosaic virus satellite RNA cis-regulatory element RF00390 Rfam UPSK RNA RF00391 Rfam RtT RNA RF00392 Rfam Small nucleolar RNA SNORA5 RF00393 Rfam Small nucleolar RNA SNORA8 RF00394 Rfam Small nucleolar RNA SNORA4 RF00396 Rfam Small nucleolar RNA SNORA13 RF00397 Rfam Small nucleolar RNA SNORA14 RF00398 Rfam Small nucleolar RNA SNORA15 RF00399 Rfam Small nucleolar RNA SNORA24 RF00400 Rfam Small nucleolar RNA SNORA28 RF00401 Rfam Small nucleolar RNA SNORA20 RF00402 Rfam Small nucleolar RNA SNORA25 RF00403 Rfam Small nucleolar RNA SNORA41 RF00404 Rfam Small nucleolar RNA SNORA46 RF00405 Rfam Small nucleolar RNA SNORA44 RF00406 Rfam Small nucleolar RNA SNORA42/SNORA80 family RF00407 Rfam Small nucleolar RNA SNORA50 RF00408 Rfam Small nucleolar RNA SNORA1 RF00409 Rfam Small nucleolar RNA SNORA7 RF00410 Rfam Small nucleolar RNA SNORA2/SNORA34 family RF00411 Rfam Small nucleolar RNA SNORA9 RF00412 Rfam Small nucleolar RNA SNORA21 RF00413 Rfam Small nucleolar RNA SNORA19 RF00414 Rfam Small nucleolar RNA SNORA22 RF00415 Rfam Small nucleolar RNA SNORA30/SNORA37 family RF00416 Rfam Small nucleolar RNA SNORA43 RF00417 Rfam Small nucleolar RNA SNORA56 RF00418 Rfam Small nucleolar RNA SNORA58 RF00419 Rfam Small nucleolar RNA SNORA52 RF00420 Rfam Small nucleolar RNA SNORA61 RF00421 Rfam Small nucleolar RNA SNORA32 RF00422 Rfam Small Cajal body specific RNA 24 RF00423 Rfam Small Cajal body specific RNA 4 RF00424 Rfam Small Cajal body specific RNA 16 RF00425 Rfam Small nucleolar RNA SNORA18 RF00426 Rfam Small Cajal body specific RNA 15 RF00427 Rfam Small Cajal body specific RNA 23 RF00428 Rfam Small nucleolar RNA SNORA38 RF00429 Rfam Small nucleolar RNA SNORA29 RF00430 Rfam Small nucleolar RNA SNORA54 RF00431 Rfam Small nucleolar RNA SNORA55 RF00432 Rfam Small nucleolar RNA SNORA51 RF00433 Rfam Hsp90 cis-regulatory element RF00434 Rfam Luteovirus cap-independent translation element (BTE) RF00435 Rfam Repression of heat shock gene expression (ROSE) element RF00436 Rfam UnaL2 LINE 3' element RF00437 Rfam Hairy RNA localisation element (HLE) RF00438 Rfam Small nucleolar RNA SNORA33 RF00439 Rfam Small nucleolar RNA SNORD87 RF00440 Rfam Small nucleolar RNA SNORD37 RF00441 Rfam Small nucleolar RNA Z242 RF00442 Rfam ykkC-yxkD leader RF00443 Rfam Small nucleolar RNA SNORA27 RF00444 Rfam PrrF RNA RF00445 Rfam mir-399 microRNA precursor family RF00446 Rfam mir-133 microRNA precursor family RF00447 Rfam Voltage-gated potassium-channel Kv1.4 IRES RF00448 Rfam Epstein-Barr virus nuclear antigen (EBNA) IRES RF00449 Rfam HIF-1 alpha IRES RF00451 Rfam mir-395 microRNA precursor family RF00452 Rfam mir-172 microRNA precursor family RF00453 Rfam Cardiovirus cis-acting replication element (CRE) RF00454 Rfam p27 cis-regulatory element RF00455 Rfam mir-15 microRNA precursor family RF00456 Rfam mir-34 microRNA precursor family RF00457 Rfam Mnt IRES RF00458 Rfam Cripavirus internal ribosome entry site (IRES) RF00459 Rfam Mason-Pfizer monkey virus packaging signal RF00460 Rfam U1A polyadenylation inhibition element (PIE) RF00461 Rfam Vascular endothelial growth factor (VEGF) IRES A RF00462 Rfam APC internal ribosome entry site (IRES) RF00463 Rfam Apolipoprotein B (apoB) 5' UTR cis-regulatory element RF00464 Rfam mir-92 microRNA precursor family RF00465 Rfam Japanese encephalitis virus (JEV) hairpin structure RF00467 Rfam Rous sarcoma virus (RSV) primer binding site (PBS) RF00468 Rfam Hepatitis C virus stem-loop VII RF00469 Rfam Hepatitis C stem-loop IV RF00470 Rfam Togavirus 5' plus strand cis-regulatory element RF00471 Rfam Small nucleolar RNA snR48 RF00472 Rfam Small nucleolar RNA snR55/Z10 RF00473 Rfam Small nucleolar RNA snR54 RF00474 Rfam Small nucleolar RNA snR57 RF00475 Rfam Small nucleolar RNA snR69 RF00476 Rfam Small nucleolar RNA snR61/Z1/Z11 RF00477 Rfam Small nucleolar RNA snR66 RF00478 Rfam Small Cajal body specific RNA 6 RF00479 Rfam Small nucleolar RNA snR71 RF00480 Rfam HIV Ribosomal frameshift signal RF00481 Rfam Hepatitis C virus 3'X element RF00482 Rfam Small nucleolar RNA F1/F2/snoR5a RF00483 Rfam Insulin-like growth factor II IRES RF00484 Rfam Connexin-32 internal ribosome entry site (IRES) RF00485 Rfam Potassium channel RNA editing signal RF00486 Rfam mir-129 microRNA precursor family RF00487 Rfam Connexin-43 internal ribosome entry site (IRES) RF00488 Rfam Yeast U1 spliceosomal RNA RF00489 Rfam ctRNA RF00490 Rfam S-element RF00492 Rfam small Cajal body-specific RNA 17 RF00493 Rfam Small nucleolar RNA U2-30 RF00494 Rfam Small nucleolar RNA U2-19 RF00495 Rfam Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES) RF00496 Rfam Coronavirus SL-III cis-acting replication element (CRE) RF00498 Rfam Equine arteritis virus leader TRS hairpin (LTH) RF00499 Rfam Human parechovirus 1 (HPeV1) cis regulatory element (CRE) RF00500 Rfam Turnip crinkle virus (TCV) repressor of minus strand synthesis H5 RF00501 Rfam Rotavirus cis-acting replication element (CRE) RF00502 Rfam Turnip crinkle virus (TCV) core promoter hairpin (Pr) RF00503 Rfam RNAIII RF00504 Rfam Glycine riboswitch RF00505 Rfam RydC RNA RF00506 Rfam Threonine operon leader RF00507 Rfam Coronavirus frameshifting stimulation element RF00509 Rfam Small nucleolar RNA snR64 RF00510 Rfam Tombusvirus internal replication element (IRE) RF00511 Rfam Kaposi's sarcoma-associated herpesvirus internal ribosome entry site (IRES) RF00512 Rfam Leucine operon leader RF00513 Rfam Tryptophan operon leader RF00514 Rfam Histidine operon leader RF00515 Rfam PyrR binding site RF00516 Rfam ylbH leader RF00517 Rfam serC leader RF00518 Rfam speF leader RF00519 Rfam suhB RF00520 Rfam ybhL leader RF00521 Rfam SAM riboswitch (alpha-proteobacteria) RF00522 Rfam PreQ1 riboswitch RF00523 Rfam Prion pseudoknot RF00524 Rfam R2 RNA element RF00525 Rfam Flavivirus DB element RF00526 Rfam Small nucleolar RNA Me28S-U3344 RF00527 Rfam Small nucleolar RNA Me28S-Gm3255 RF00528 Rfam Small nucleolar RNA Me28S-Gm1083 RF00529 Rfam Small nucleolar RNA Me28S-Am2589 RF00530 Rfam Small nucleolar RNA Me28S-Cm2645 RF00531 Rfam Small nucleolar RNA Me28S-Gm3113 RF00532 Rfam Small nucleolar RNA Me18S-Um1356 RF00533 Rfam Small nucleolar RNA Me18S-Gm1358 RF00534 Rfam SgrS RNA RF00535 Rfam Small nucleolar RNA Me28S-Am982 RF00536 Rfam Small nucleolar RNA Me28S-Cm3227 RF00537 Rfam Small nucleolar RNA Me28S-Am2634 RF00538 Rfam Small nucleolar RNA CD11 RF00539 Rfam Small nucleolar RNA Me28S-Cm788 RF00540 Rfam Small nucleolar RNA psi18S-1854 RF00541 Rfam Small nucleolar RNA psi28S-2876 RF00542 Rfam Small nucleolar RNA psi28S-1192 RF00543 Rfam Small nucleolar RNA psi18S-1377 RF00544 Rfam Small nucleolar RNA psi28S-3327 RF00545 Rfam Small nucleolar RNA psi18S-841/snoR66 RF00546 Rfam Small nucleolar RNA psi28S-3316 RF00547 Rfam TrkB IRES RF00548 Rfam U11 spliceosomal RNA RF00549 Rfam c-sis internal ribosome entry site (IRES) RF00550 Rfam Hepatitis E virus cis-reactive element RF00551 Rfam Bicoid 3'-UTR regulatory element RF00552 Rfam rncO RF00553 Rfam Small Cajal body specific RNA 1 RF00554 Rfam Small nucleolar RNA SNORA48 RF00555 Rfam Ribosomal protein L13 leader RF00556 Rfam Ribosomal protein L19 leader RF00557 Rfam Ribosomal protein L10 leader RF00558 Rfam Ribosomal protein L20 leader RF00559 Rfam Ribosomal protein L21 leader RF00560 Rfam Small nucleolar RNA SNORA17 RF00561 Rfam Small nucleolar RNA SNORA40 RF00562 Rfam Small nucleolar RNA SNORA49 RF00563 Rfam Small nucleolar RNA SNORA53 RF00564 Rfam Small Cajal body specific RNA 11 RF00565 Rfam Small Cajal body specific RNA 3 RF00566 Rfam Small nucleolar RNA SNORA35 RF00567 Rfam Small nucleolar RNA SNORD17 RF00568 Rfam Small nucleolar RNA SNORA26 RF00569 Rfam Small nucleolar RNA SNORD19 RF00570 Rfam Small Nucleolar RNA SNORD64 RF00571 Rfam Small nucleolar RNA SNORD65 RF00572 Rfam Small nucleolar RNA SNORD66 RF00573 Rfam Small nucleolar RNA SNORD67 RF00574 Rfam Small nucleolar RNA SNORD69 RF00575 Rfam Small nucleolar RNA SNORD70 RF00576 Rfam Small nucleolar RNA SNORD71 RF00577 Rfam Small nucleolar RNA SNORD72 RF00578 Rfam Small nucleolar RNA SNORD89 RF00579 Rfam Small nucleolar RNA SNORD90 RF00580 Rfam Small nucleolar RNA SNORD91 family RF00581 Rfam Small nucleolar SNORD12/SNORD106 RF00582 Rfam Small Cajal body specific RNA 14 RF00584 Rfam Small nucleolar RNA SNORD105 RF00586 Rfam Small nucleolar RNA SNORA12 RF00588 Rfam Small nucleolar RNA SNORD41 RF00591 Rfam Small nucleolar RNA SNORD77 RF00592 Rfam Small nucleolar RNA SNORD78 RF00593 Rfam Small nucleolar RNA U83B RF00594 Rfam Small nucleolar RNA SNORD86 RF00598 Rfam Small nucleolar RNA SNORA76 RF00599 Rfam Small nucleolar RNA SNORA77 RF00600 Rfam Small nucleolar RNA SNORA79 RF00601 Rfam Small Cajal body specific RNA 20 RF00602 Rfam Small Cajal body specific RNA 21 RF00603 Rfam Small nucleolar RNA SNORD23 RF00604 Rfam Small nucleolar RNA SNORD88 RF00606 Rfam Small nucleolar RNA SNORD93 RF00607 Rfam Small nucleolar RNA SNORD98 RF00608 Rfam Small nucleolar RNA SNORD99 RF00609 Rfam Small nucleolar RNA SNORD100 RF00610 Rfam Small nucleolar RNA SNORD110 RF00611 Rfam Small nucleolar RNA SNORD111 RF00612 Rfam Small nucleolar RNA SNORD75 RF00613 Rfam Small nucleolar RNA SNORD94 RF00614 Rfam Small nucleolar RNA SNORA11 RF00615 Rfam Listeria Hfq binding LhrA RF00616 Rfam Listeria Hfq binding LhrC RF00617 Rfam flavivirus capsid hairpin cHP RF00618 Rfam U4atac minor spliceosomal RNA RF00619 Rfam U6atac minor spliceosomal RNA RF00620 Rfam Hepatitis C alternative reading frame stem-loop RF00621 Rfam Beta-globin co-transcriptional cleavage ribozyme RF00622 Rfam Mammalian CPEB3 ribozyme RF00623 Rfam Pseudomonas sRNA P1 RF00624 Rfam Pseudomonas sRNA P9 RF00625 Rfam Pseudomonas sRNA P11 RF00626 Rfam Gurken localisation signal RF00627 Rfam Pseudomonas sRNA P15 RF00628 Rfam Pseudomonas sRNA P16 RF00629 Rfam Pseudomonas sRNA P24 RF00630 Rfam Pseudomonas sRNA P26 RF00632 Rfam sxy 5' UTR element RF00634 Rfam S-adenosyl methionine (SAM) riboswitch, RF00635 Rfam Highly accelerated region 1A/1B RF00636 Rfam ncRNA Repressor of NFAT (nuclear factor of activated T cells) RF00637 Rfam microRNA mir-276 RF00638 Rfam microRNA MIR159 RF00639 Rfam microRNA mir-515 RF00640 Rfam microRNA MIR167_1 RF00641 Rfam microRNA mir-154 RF00642 Rfam microRNA mir-23 RF00643 Rfam microRNA MIR171_1 RF00644 Rfam microRNA mir-27 RF00645 Rfam microRNA MIR169_2 RF00646 Rfam microRNA mir-204 RF00647 Rfam microRNA MIR164 RF00648 Rfam microRNA MIR396 RF00649 Rfam microRNA mir-128 RF00650 Rfam microRNA mir-153 RF00651 Rfam microRNA mir-221 RF00652 Rfam microRNA MIR478 RF00653 Rfam microRNA mir-22 RF00654 Rfam microRNA mir-216 RF00655 Rfam microRNA mir-28 RF00656 Rfam microRNA mir-205 RF00657 Rfam microRNA mir-184 RF00658 Rfam microRNA mir-21 RF00659 Rfam microRNA mir-365 RF00660 Rfam microRNA mir-214 RF00661 Rfam microRNA mir-31 RF00662 Rfam microRNA mir-132 RF00663 Rfam microRNA mir-183 RF00664 Rfam microRNA mir-223 RF00665 Rfam microRNA mir-290 RF00666 Rfam microRNA mir-32 RF00667 Rfam microRNA mir-33 RF00668 Rfam microRNA mir-302 RF00669 Rfam microRNA mir-96 RF00670 Rfam microRNA mir-105 RF00671 Rfam microRNA mir-138 RF00672 Rfam microRNA mir-190 RF00673 Rfam microRNA mir-217 RF00674 Rfam microRNA mir-187 RF00675 Rfam microRNA mir-145 RF00676 Rfam microRNA mir-127 RF00677 Rfam microRNA MIR168 RF00678 Rfam microRNA mir-140 RF00679 Rfam microRNA mir-210 RF00680 Rfam microRNA mir-224 RF00681 Rfam microRNA mir-198 RF00682 Rfam microRNA mir-144 RF00683 Rfam microRNA mir-143 RF00684 Rfam mir-122 microRNA precursor RF00685 Rfam microRNA mir-36 RF00686 Rfam microRNA mir-338 RF00687 Rfam microRNA mir-136 RF00688 Rfam microRNA MIR394 RF00689 Rfam microRNA MIR390 RF00690 Rfam microRNA MIR408 RF00691 Rfam microRNA mir-146 RF00692 Rfam microRNA MIR171_2 RF00693 Rfam microRNA mir-147 RF00694 Rfam microRNA mir-137 RF00695 Rfam microRNA MIR398 RF00696 Rfam microRNA mir-203 RF00697 Rfam microRNA mir-186 RF00698 Rfam microRNA mir-489 RF00699 Rfam microRNA mir-134 RF00700 Rfam microRNA mir-375 RF00701 Rfam microRNA mir-126 RF00702 Rfam microRNA mir-182 RF00703 Rfam microRNA mir-139 RF00704 Rfam microRNA MIR397 RF00705 Rfam microRNA mir-202 RF00706 Rfam microRNA mir-263 RF00707 Rfam microRNA mir-197 RF00708 Rfam microRNA mir-450 RF00709 Rfam microRNA mir-455 RF00710 Rfam microRNA mir-44 RF00711 Rfam microRNA mir-449 RF00712 Rfam microRNA mir-460 RF00713 Rfam microRNA mir-239 RF00714 Rfam microRNA MIR535 RF00715 Rfam microRNA mir-383 RF00716 Rfam microRNA mir-3 RF00717 Rfam microRNA mir-315 RF00718 Rfam microRNA mir-431 RF00719 Rfam microRNA mir-326 RF00720 Rfam microRNA mir-317 RF00721 Rfam microRNA MIR475 RF00722 Rfam microRNA mir-451 RF00723 Rfam microRNA mir-448 RF00724 Rfam microRNA mir-282 RF00725 Rfam microRNA mir-iab-4 RF00726 Rfam microRNA mir-87 RF00727 Rfam microRNA bantam RF00728 Rfam microRNA mir-81 RF00729 Rfam microRNA mir-278 RF00730 Rfam microRNA mir-277 RF00731 Rfam microRNA mir-155 RF00732 Rfam microRNA mir-305 RF00733 Rfam microRNA mir-296 RF00734 Rfam microRNA mir-52 RF00735 Rfam microRNA mir-367 RF00736 Rfam microRNA mir-320 RF00737 Rfam microRNA mir-322 RF00739 Rfam microRNA MIR476 RF00740 Rfam microRNA mir-370 RF00741 Rfam microRNA mir-378 RF00742 Rfam microRNA MIR162_2 RF00743 Rfam microRNA mir-308 RF00744 Rfam microRNA mir-361 RF00745 Rfam microRNA mir-499 RF00746 Rfam microRNA mir-454 RF00747 Rfam microRNA mir-283 RF00748 Rfam microRNA mir-433 RF00749 Rfam microRNA mir-208 RF00750 Rfam microRNA mir-458 RF00751 Rfam microRNA mir-12 RF00752 Rfam microRNA mir-14 RF00753 Rfam microRNA mir-503 RF00754 Rfam microRNA mir-279 RF00755 Rfam microRNA mir-542 RF00756 Rfam microRNA mir-299 RF00757 Rfam microRNA mir-275 RF00758 Rfam microRNA mir-346 RF00760 Rfam microRNA mir-342 RF00761 Rfam microRNA mir-340 RF00762 Rfam microRNA mir-412 RF00763 Rfam microRNA mir-339 RF00764 Rfam microRNA mir-191 RF00765 Rfam microRNA mir-337 RF00766 Rfam microRNA mir-335 RF00767 Rfam microRNA mir-150 RF00768 Rfam microRNA MIR405 RF00769 Rfam microRNA mir-331 RF00770 Rfam microRNA mir-330 RF00771 Rfam microRNA mir-185 RF00772 Rfam microRNA mir-328 RF00773 Rfam microRNA mir-298 RF00774 Rfam microRNA mir-360 RF00775 Rfam microRNA mir-432 RF00776 Rfam microRNA mir-540 RF00777 Rfam microRNA mir-541 RF00778 Rfam microRNA MIR473 RF00779 Rfam microRNA MIR474 RF00780 Rfam microRNA MIR477 RF00781 Rfam microRNA mir-505 RF00782 Rfam microRNA MIR480 RF00783 Rfam microRNA mir-484 RF00784 Rfam microRNA mir-486 RF00785 Rfam microRNA mir-90 RF00786 Rfam microRNA mir-289 RF00787 Rfam microRNA mir-288 RF00788 Rfam microRNA mir-287 RF00789 Rfam microRNA mir-286 RF00790 Rfam microRNA mir-358 RF00791 Rfam microRNA mir-357 RF00792 Rfam microRNA mir-490 RF00793 Rfam microRNA mir-497 RF00794 Rfam microRNA mir-42 RF00795 Rfam microRNA mir-43 RF00796 Rfam microRNA mir-48 RF00797 Rfam microRNA mir-355 RF00798 Rfam microRNA mir-49 RF00799 Rfam microRNA mir-354 RF00800 Rfam microRNA mir-353 RF00801 Rfam microRNA mir-280 RF00802 Rfam microRNA mir-207 RF00803 Rfam microRNA mir-425 RF00804 Rfam microRNA mir-240 RF00805 Rfam microRNA mir-351 RF00806 Rfam microRNA mir-350 RF00807 Rfam microRNA mir-314 RF00808 Rfam microRNA mir-86 RF00809 Rfam microRNA mir-241 RF00810 Rfam microRNA mir-85 RF00811 Rfam microRNA mir-84 RF00812 Rfam microRNA mir-83 RF00813 Rfam microRNA mir-11 RF00814 Rfam microRNA mir-316 RF00815 Rfam microRNA mir-244 RF00816 Rfam microRNA mir-245 RF00817 Rfam microRNA mir-80 RF00818 Rfam microRNA mir-318 RF00819 Rfam microRNA mir-246 RF00820 Rfam microRNA mir-248 RF00821 Rfam microRNA mir-249 RF00822 Rfam microRNA mir-274 RF00823 Rfam microRNA lsy-6 RF00824 Rfam microRNA mir-50 RF00825 Rfam microRNA mir-344 RF00826 Rfam microRNA mir-55 RF00827 Rfam microRNA mir-77 RF00828 Rfam microRNA mir-75 RF00829 Rfam microRNA mir-149 RF00830 Rfam microRNA mir-74 RF00831 Rfam microRNA mir-73 RF00832 Rfam microRNA mir-71 RF00833 Rfam microRNA mir-70 RF00834 Rfam microRNA mir-268 RF00835 Rfam microRNA mir-58 RF00836 Rfam microRNA mir-250 RF00837 Rfam microRNA mir-251 RF00838 Rfam microRNA mir-252 RF00839 Rfam microRNA mir-452 RF00840 Rfam microRNA mir-374 RF00841 Rfam microRNA mir-384 RF00842 Rfam microRNA MIR403 RF00843 Rfam microRNA mir-228 RF00844 Rfam microRNA mir-67 RF00845 Rfam microRNA MIR158 RF00846 Rfam microRNA mir-64 RF00847 Rfam microRNA mir-62 RF00848 Rfam microRNA mir-61 RF00849 Rfam microRNA mir-60 RF00850 Rfam microRNA mir-259 RF00851 Rfam microRNA mir-230 RF00852 Rfam microRNA mir-231 RF00853 Rfam microRNA mir-304 RF00854 Rfam microRNA mir-5 RF00855 Rfam microRNA mir-254 RF00856 Rfam microRNA mir-232 RF00857 Rfam microRNA mir-233 RF00858 Rfam microRNA mir-306 RF00859 Rfam microRNA mir-234 RF00861 Rfam microRNA mir-488 RF00862 Rfam microRNA mir-491 RF00863 Rfam microRNA mir-BART17 RF00864 Rfam microRNA mir-BART20 RF00865 Rfam microRNA MIR169_5 RF00866 Rfam microRNA mir-BART3 RF00867 Rfam microRNA mir-BART5 RF00868 Rfam microRNA mir-BART15 RF00869 Rfam microRNA mir-BART7 RF00870 Rfam microRNA mir-423 RF00871 Rfam microRNA mir-689 RF00872 Rfam microRNA mir-652 RF00873 Rfam microRNA mir-550 RF00874 Rfam microRNA mir-BART12 RF00875 Rfam microRNA mir-692 RF00876 Rfam microRNA mir-684 RF00877 Rfam microRNA mir-592 RF00878 Rfam microRNA mir-456 RF00879 Rfam microRNA mir-615 RF00882 Rfam microRNA MIR811 RF00883 Rfam microRNA MIR820 RF00884 Rfam microRNA MIR815 RF00885 Rfam microRNA MIR821 RF00886 Rfam microRNA MIR807 RF00887 Rfam microRNA mir-802 RF00888 Rfam microRNA mir-770 RF00890 Rfam microRNA mir-668 RF00891 Rfam microRNA mir-671 RF00892 Rfam microRNA mir-551 RF00893 Rfam microRNA MIR854 RF00894 Rfam microRNA mir-790 RF00895 Rfam microRNA mir-786 RF00896 Rfam microRNA mir-787 RF00897 Rfam microRNA mir-675 RF00898 Rfam microRNA mir-242 RF00899 Rfam microRNA mir-235 RF00900 Rfam microRNA mir-255 RF00901 Rfam microRNA MIR845_1 RF00902 Rfam microRNA mir-791 RF00903 Rfam microRNA mir-359 RF00904 Rfam microRNA mir-392 RF00905 Rfam microRNA mir-789 RF00906 Rfam microRNA MIR1122 RF00907 Rfam microRNA mir-941 RF00908 Rfam microRNA MIR529 RF00909 Rfam microRNA mir-883 RF00910 Rfam microRNA mir-873 RF00911 Rfam microRNA mir-672 RF00912 Rfam microRNA mir-877 RF00914 Rfam microRNA mir-674 RF00915 Rfam microRNA mir-760 RF00917 Rfam microRNA mir-708 RF00918 Rfam microRNA mir-872 RF00919 Rfam microRNA mir-874 RF00920 Rfam microRNA MIR444 RF00921 Rfam microRNA mir-665 RF00922 Rfam microRNA mir-673 RF00925 Rfam microRNA MIR1027 RF00926 Rfam microRNA MIR1151 RF00927 Rfam microRNA mir-582 RF00928 Rfam microRNA mir-590 RF00929 Rfam microRNA mir-574 RF00931 Rfam microRNA mir-879 RF00932 Rfam microRNA mir-471 RF00933 Rfam microRNA mir-875 RF00934 Rfam microRNA mir-463 RF00935 Rfam microRNA mir-876 RF00936 Rfam microRNA mir-744 RF00937 Rfam microRNA mir-653 RF00939 Rfam microRNA mir-504 RF00940 Rfam microRNA mir-327 RF00941 Rfam microRNA mir-434 RF00942 Rfam microRNA mir-1224 RF00943 Rfam microRNA MIR824 RF00945 Rfam microRNA mir-1226 RF00946 Rfam microRNA mir-1225 RF00947 Rfam microRNA mir-929 RF00948 Rfam microRNA mir-996 RF00949 Rfam microRNA mir-983 RF00950 Rfam microRNA mir-927 RF00951 Rfam microRNA mir-1302 RF00952 Rfam microRNA mir-650 RF00953 Rfam microRNA mir-1497 RF00954 Rfam microRNA MIR1446 RF00955 Rfam microRNA mir-1829 RF00956 Rfam microRNA MIR1444 RF00957 Rfam microRNA mir-663 RF00958 Rfam microRNA mir-498 RF00959 Rfam microRNA mir-612 RF00960 Rfam microRNA mir-661 RF00961 Rfam microRNA mir-581 RF00962 Rfam microRNA mir-586 RF00963 Rfam microRNA mir-642 RF00964 Rfam microRNA mir-938 RF00965 Rfam microRNA mir-549 RF00966 Rfam microRNA mir-676 RF00967 Rfam microRNA mir-281 RF00968 Rfam microRNA mir-626 RF00969 Rfam microRNA mir-556 RF00970 Rfam microRNA mir-648 RF00971 Rfam microRNA mir-578 RF00972 Rfam microRNA mir-651 RF00973 Rfam microRNA mir-597 RF00974 Rfam microRNA mir-607 RF00975 Rfam microRNA MIR845_2 RF00976 Rfam microRNA mir-583 RF00977 Rfam microRNA mir-600 RF00978 Rfam microRNA mir-638 RF00979 Rfam microRNA mir-553 RF00980 Rfam microRNA mir-643 RF00981 Rfam microRNA mir-939 RF00983 Rfam microRNA mir-662 RF00984 Rfam microRNA mir-576 RF00985 Rfam microRNA mir-640 RF00986 Rfam microRNA mir-920 RF00987 Rfam microRNA mir-589 RF00988 Rfam microRNA mir-657 RF00989 Rfam microRNA mir-492 RF00990 Rfam microRNA mir-552 RF00991 Rfam microRNA mir-599 RF00992 Rfam microRNA mir-593 RF00993 Rfam microRNA mir-1473 RF00994 Rfam microRNA mir-1255 RF00995 Rfam microRNA mir-616 RF00996 Rfam microRNA mir-631 RF00997 Rfam microRNA mir-942 RF00998 Rfam microRNA mir-562 RF00999 Rfam microRNA mir-924 RF01000 Rfam microRNA mir-580 RF01001 Rfam microRNA mir-609 RF01002 Rfam microRNA mir-936 RF01003 Rfam microRNA mir-563 RF01004 Rfam microRNA mir-557 RF01005 Rfam microRNA MIR530 RF01006 Rfam microRNA mir-601 RF01007 Rfam microRNA mir-624 RF01008 Rfam microRNA mir-636 RF01009 Rfam microRNA mir-M7 RF01010 Rfam microRNA mir-632 RF01011 Rfam microRNA mir-605 RF01012 Rfam microRNA mir-628 RF01013 Rfam microRNA mir-577 RF01014 Rfam microRNA mir-1306 RF01015 Rfam microRNA mir-885 RF01016 Rfam microRNA mir-584 RF01017 Rfam microRNA mir-625 RF01018 Rfam microRNA mir-569 RF01019 Rfam microRNA mir-922 RF01020 Rfam microRNA mir-572 RF01021 Rfam microRNA mir-558 RF01022 Rfam microRNA mir-611 RF01023 Rfam microRNA mir-940 RF01024 Rfam microRNA mir-944 RF01025 Rfam microRNA mir-934 RF01026 Rfam microRNA MIR828 RF01027 Rfam microRNA mir-765 RF01028 Rfam microRNA mir-633 RF01029 Rfam microRNA mir-649 RF01030 Rfam microRNA mir-422 RF01031 Rfam microRNA mir-639 RF01032 Rfam microRNA mir-554 RF01033 Rfam microRNA mir-767 RF01034 Rfam microRNA mir-618 RF01035 Rfam microRNA mir-887 RF01036 Rfam microRNA mir-567 RF01037 Rfam microRNA mir-644 RF01038 Rfam microRNA mir-1307 RF01039 Rfam microRNA mir-937 RF01040 Rfam microRNA mir-573 RF01041 Rfam microRNA mir-604 RF01042 Rfam microRNA mir-891 RF01043 Rfam microRNA MIR1023 RF01044 Rfam microRNA mir-345 RF01045 Rfam microRNA mir-544 RF01046 Rfam Wingless localisation element 3 (WLE3) RF01047 Rfam HBV RNA encapsidation signal epsilon RF01050 Rfam Saccharomyces telomerase RF01051 Rfam Cyclic di-GMP-I riboswitch RF01052 Rfam Arthropod 7SK RNA RF01053 Rfam Deinococcus radiodurans Y RNA RF01054 Rfam preQ1-II (pre queuosine) riboswitch RF01055 Rfam Moco (molybdenum cofactor) riboswitch RF01056 Rfam Magnesium Sensor RF01057 Rfam S-adenosyl-L-homocysteine riboswitch RF01059 Rfam microRNA mir-598 RF01061 Rfam microRNA mir-548 RF01063 Rfam microRNA mir-324 RF01064 Rfam microRNA mir-253 RF01065 Rfam 23S methyl RNA motif RF01066 Rfam 6C RNA RF01067 Rfam ATPC RNA motif RF01068 Rfam mini-ykkC RNA motif RF01069 Rfam purD RNA motif RF01070 Rfam SucA RNA motif RF01071 Rfam Ornate Large Extremophilic RNA RF01072 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01073 Rfam Gag/pol translational readthrough site RF01074 Rfam Putative RNA-dependent RNA polymerase ribosomal frameshift site RF01075 Rfam Pseudoknot of tRNA-like structure RF01076 Rfam Polymerase ribosomal frameshift site RF01077 Rfam Pseudoknot of tRNA-like structure RF01078 Rfam 3'-terminal pseudoknot in PYVV RF01079 Rfam Putative RNA-dependent RNA polymerase ribosomal frameshift site RF01080 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01081 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01082 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01083 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01084 Rfam Pseudoknot of tRNA-like structure RF01085 Rfam Pseudoknot of tRNA-like structure RF01087 Rfam Pseudoknot of the regulatory region of the repZ gene RF01088 Rfam Pseudoknot of tRNA-like structure RF01089 Rfam Pseudoknot of the regulatory region of the repBA gene RF01090 Rfam Edr gene ribosomal frameshift signal RF01091 Rfam 3'-terminal pseudoknot in SPCSV RF01092 Rfam Gag/pol translational readthrough site RF01093 Rfam Ma3 gene ribosomal frameshift signal RF01094 Rfam Polymerase ribosomal frameshift site RF01095 Rfam 3'-terminal pseudoknot of CuYV/BPYV RF01096 Rfam HepA virus 3'-terminal pseudoknot RF01097 Rfam Gag/pro ribosomal frameshift site RF01098 Rfam Gag/pro ribosomal frameshift site RF01099 Rfam Pseudoknot of influenza A virus gene RF01100 Rfam 3'-terminal pseudoknot in BYV RF01101 Rfam Pseudoknot of tRNA-like structure RF01102 Rfam 5'-leader pseudoknot of TEV/CVMV RF01103 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01104 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01105 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01106 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01107 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01108 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01109 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01111 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01112 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01113 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01114 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01115 Rfam Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR RF01116 Rfam Cyanobacterial functional RNA 1 RF01117 Rfam Ciona microRNA mir-92 RF01118 Rfam Pseudoknot of the domain G(G12) of 23S ribosomal RNA RF01119 Rfam Small nucleolar RNA sR32 RF01120 Rfam Small nucleolar RNA sR33 RF01121 Rfam Small nucleolar RNA sR38 RF01122 Rfam Small nucleolar RNA sR39 RF01123 Rfam Small nucleolar RNA sR35 RF01124 Rfam Small nucleolar RNA sR36 RF01125 Rfam Small nucleolar RNA sR4 RF01126 Rfam Small nucleolar RNA sR41 RF01127 Rfam Small nucleolar RNA sR42 RF01128 Rfam Small nucleolar RNA sR42 RF01129 Rfam Small nucleolar RNA sR44 RF01130 Rfam Small nucleolar RNA sR46 RF01131 Rfam Small nucleolar RNA sR47 RF01132 Rfam Small nucleolar RNA sR48 RF01133 Rfam Small nucleolar RNA sR3 RF01134 Rfam Small nucleolar RNA sR30 RF01135 Rfam Small nucleolar RNA sR24 RF01136 Rfam Small nucleolar RNA sR28 RF01137 Rfam Small nucleolar RNA sR21 RF01138 Rfam Small nucleolar RNA sR23 RF01139 Rfam Small nucleolar RNA sR2 RF01140 Rfam Small nucleolar RNA sR20 RF01141 Rfam Small nucleolar RNA sR18 RF01142 Rfam Small nucleolar RNA sR19 RF01143 Rfam Small nucleolar RNA sR16 RF01144 Rfam Small nucleolar RNA sR17 RF01145 Rfam Small nucleolar RNA sR14 RF01146 Rfam Small nucleolar RNA sR15 RF01147 Rfam Small nucleolar RNA sR12 RF01148 Rfam Small nucleolar RNA sR13 RF01149 Rfam Small nucleolar RNA sR10 RF01150 Rfam Small nucleolar RNA sR11 RF01151 Rfam Small nucleolar RNA U82P RF01152 Rfam Small nucleolar RNA sR1 RF01153 Rfam Small nucleolar RNA sn3060 RF02276 Rfam Hammerhead ribozyme (type II) RF01155 Rfam Small nucleolar RNA snoR101 RF01156 Rfam Small nucleolar RNA SNORD123 RF01157 Rfam Small nucleolar RNA sn1185 RF01158 Rfam Small nucleolar RNA SNORD108 RF01159 Rfam Small nucleolar RNA U18 RF01160 Rfam Small nucleolar RNA sn2841 RF01161 Rfam Small nucleolar RNA SNORD5 RF01162 Rfam Small nucleolar RNA sn668 RF01163 Rfam Small nucleolar RNA snoR64a RF01164 Rfam Small nucleolar RNA SNORD107 RF01165 Rfam Small nucleolar RNA sn2317 RF01166 Rfam Small nucleolar RNA sn3071 RF01167 Rfam Small nucleolar RNA sn2429 RF01168 Rfam Small nucleolar RNA SNORD126 RF01169 Rfam Small nucleolar RNA SNORD112 RF01170 Rfam Small nucleolar RNA U61 RF01171 Rfam Small nucleolar RNA snoR4 RF01172 Rfam Small nucleolar RNA sn2343 RF01173 Rfam Small nucleolar RNA U105B RF01174 Rfam Small nucleolar RNA U43 RF01175 Rfam Small nucleolar RNA U83 RF01176 Rfam Small nucleolar RNA snR78 RF01177 Rfam Small nucleolar RNA snR67 RF01178 Rfam Small nucleolar RNA snoR77Y RF01179 Rfam Small nucleolar RNA U83 RF01180 Rfam Small nucleolar RNA snoR110 RF01181 Rfam Small nucleolar RNA snR77 RF01182 Rfam Small nucleolar RNA SNORD11 RF01183 Rfam Small nucleolar RNA SNORD19B RF01184 Rfam Small nucleolar RNA snR79 RF01185 Rfam Small nucleolar RNA snR75 RF01186 Rfam Small nucleolar RNA SNORD127 RF02275 Rfam Hammerhead ribozyme HH9 RF01188 Rfam Small nucleolar RNA snR56 RF01189 Rfam Small nucleolar RNA sn1502 RF01190 Rfam Small nucleolar RNA snR50 RF01191 Rfam Small nucleolar RNA SNORD121A RF01192 Rfam Small nucleolar RNA SNORD11B RF01193 Rfam Small nucleolar RNA snoR20a RF01194 Rfam Small nucleolar RNA sn2903 RF01195 Rfam Small nucleolar RNA snR52 RF01196 Rfam Small nucleolar RNA Z30a RF01197 Rfam Small nucleolar RNA snR39 RF01198 Rfam Small nucleolar RNA snoR69Y RF01199 Rfam Small nucleolar RNA snR58 RF01200 Rfam Small nucleolar RNA SNORD125 RF01201 Rfam Small nucleolar RNA snR40 RF01202 Rfam Small nucleolar RNA sn2991 RF01203 Rfam Small nucleolar RNA snR47 RF01204 Rfam Small nucleolar RNA snR65 RF01205 Rfam Small nucleolar RNA snR62 RF01206 Rfam Small nucleolar RNA snoR109 RF01207 Rfam Small nucleolar RNA snR73 RF01208 Rfam Small nucleolar RNA snoR99 RF01209 Rfam Small nucleolar RNA snR76 RF01210 Rfam Small nucleolar RNA U13 RF01211 Rfam Small nucleolar RNA SNORD124 RF01212 Rfam Small nucleolar RNA sn2524 RF01213 Rfam Small nucleolar RNA snoR103 RF01214 Rfam Small nucleolar RNA snR51 RF01215 Rfam Small nucleolar RNA snoR97 RF01216 Rfam Small nucleolar RNA snR87 RF01218 Rfam Small nucleolar RNA snR41 RF01219 Rfam Small nucleolar RNA snoR100 RF01220 Rfam Small nucleolar RNA snoR104 RF01221 Rfam Small nucleolar RNA U6-47 RF01222 Rfam Small nucleolar RNA sn2417 RF01223 Rfam Small nucleolar RNA snR13 RF01224 Rfam Small nucleolar RNA snoR80 RF01225 Rfam Small nucleolar RNA ACA64 RF01226 Rfam Small nucleolar RNA Z5 RF01227 Rfam Small nucleolar RNA snoR83 RF01228 Rfam Small nucleolar RNA snoR111 RF01229 Rfam Small nucleolar RNA SNORA84 RF01230 Rfam Small nucleolar RNA snoR77 RF01231 Rfam Small nucleolar RNA snoR74 RF01232 Rfam Small nucleolar RNA R442 RF01233 Rfam Small nucleolar RNA U109 RF01234 Rfam Small nucleolar RNA SNORA47 RF01235 Rfam Small nucleolar RNA snR68 RF01236 Rfam Small nucleolar RNA U19 RF01237 Rfam Small nucleolar RNA snR161 RF01238 Rfam Small nucleolar RNA snR70 RF01239 Rfam Small nucleolar RNA snR49 RF01240 Rfam Small nucleolar RNA snR85 RF01241 Rfam Small nucleolar RNA SNORA81 RF01242 Rfam Small nucleolar RNA snR36 RF01243 Rfam Small nucleolar RNA snR33 RF01244 Rfam Small nucleolar RNA snR4 RF01245 Rfam Small nucleolar RNA snR9 RF01246 Rfam Small nucleolar RNA snR81 RF01247 Rfam Small nucleolar RNA snR32 RF01248 Rfam Small nucleolar RNA snR8 RF01249 Rfam Small nucleolar RNA snR190 RF01250 Rfam Small nucleolar RNA snR189 RF01251 Rfam Small nucleolar RNA snR3 RF01252 Rfam Small nucleolar RNA snR5 RF01253 Rfam Small nucleolar RNA snR46 RF01254 Rfam Small nucleolar RNA snR34 RF01255 Rfam Small nucleolar RNA snR35 RF01256 Rfam Small nucleolar RNA snR43 RF01257 Rfam Small nucleolar RNA snR31 RF01258 Rfam Small nucleolar RNA snR10 RF01259 Rfam Small nucleolar RNA snR63 RF01260 Rfam Small nucleolar RNA snR11 RF01261 Rfam Small nucleolar RNA snR82 RF01262 Rfam Small nucleolar RNA snR44 RF01263 Rfam Small nucleolar RNA snR191 RF01264 Rfam Small nucleolar RNA snR83 RF01265 Rfam Small nucleolar RNA snR42 RF01266 Rfam Small nucleolar RNA snR45 RF01267 Rfam Small nucleolar RNA snR37 RF01268 Rfam Small Cajal body-specific RNA 2 RF01269 Rfam Small nucleolar RNA snR80 RF01270 Rfam Small nucleolar RNA snR84 RF01271 Rfam Small nucleolar RNA snR30 RF01272 Rfam Small nucleolar RNA snR86 RF01273 Rfam Small nucleolar RNA sR34 RF01274 Rfam Small nucleolar RNA sR45 RF01275 Rfam Small nucleolar RNA sR22 RF01276 Rfam Small nucleolar RNA sR53 RF01277 Rfam Small nucleolar RNA U54 RF01278 Rfam Small nucleolar RNA SNORD109A RF01279 Rfam Small nucleolar RNA snoR53Y RF01280 Rfam Small nucleolar RNA snoR14 RF01281 Rfam Small nucleolar RNA snoR35 RF01283 Rfam Small nucleolar RNA U30 RF01284 Rfam Small nucleolar RNA snoR8a RF01285 Rfam Small nucleolar RNA U31b RF01286 Rfam Small nucleolar RNA snoR26 RF01287 Rfam Small nucleolar RNA snoR27 RF01288 Rfam Small nucleolar RNA snoR31 RF01289 Rfam Small nucleolar RNA snoR17 RF01290 Rfam Small nucleolar RNA SNORD10 RF01291 Rfam Small nucleolar RNA SNORD97 RF01292 Rfam Small nucleolar RNA snoR2/U65 RF01293 Rfam Small nucleolar RNA ACA59 RF01294 Rfam Small nucleolar RNA U89 RF01295 Rfam Small Cajal body-specific RNA 7 RF01296 Rfam Small nucleolar RNA U85 RF01297 Rfam Small nucleolar RNA sR40 RF01298 Rfam Small nucleolar RNA U25 RF01299 Rfam Small nucleolar RNA SNORD2 RF01300 Rfam Small nucleolar RNA U49 RF01301 Rfam Small nucleolar RNA snoR4a RF01302 Rfam SnoRNA U36a RF01303 Rfam Small nucleolar RNA sR49 RF01304 Rfam Small nucleolar RNA sR5 RF01305 Rfam Small nucleolar RNA sR51 RF01306 Rfam Small nucleolar RNA sR52 RF01307 Rfam Small nucleolar RNA sR55 RF01308 Rfam Small nucleolar RNA sR58 RF01309 Rfam Small nucleolar RNA sR60 RF01310 Rfam Small nucleolar RNA sR7 RF01311 Rfam Small nucleolar RNA sR8 RF01312 Rfam Small nucleolar RNA sR9 RF01313 Rfam Avian HBV RNA encapsidation signal epsilon RF01314 Rfam microRNA mir-1227 RF01315 Rfam CRISPR RNA direct repeat element RF01316 Rfam CRISPR RNA direct repeat element RF01317 Rfam CRISPR RNA direct repeat element RF01318 Rfam CRISPR RNA direct repeat element RF01319 Rfam CRISPR RNA direct repeat element RF01320 Rfam CRISPR RNA direct repeat element RF01321 Rfam CRISPR RNA direct repeat element RF01322 Rfam CRISPR RNA direct repeat element RF01323 Rfam CRISPR RNA direct repeat element RF01324 Rfam CRISPR RNA direct repeat element RF01325 Rfam CRISPR RNA direct repeat element RF01326 Rfam CRISPR RNA direct repeat element RF01327 Rfam CRISPR RNA direct repeat element RF01328 Rfam CRISPR RNA direct repeat element RF01329 Rfam CRISPR RNA direct repeat element RF01330 Rfam CRISPR RNA direct repeat element RF01331 Rfam CRISPR RNA direct repeat element RF01332 Rfam CRISPR RNA direct repeat element RF01333 Rfam CRISPR RNA direct repeat element RF01334 Rfam CRISPR RNA direct repeat element RF01335 Rfam CRISPR RNA direct repeat element RF01336 Rfam CRISPR RNA direct repeat element RF01337 Rfam CRISPR RNA direct repeat element RF01338 Rfam CRISPR RNA direct repeat element RF01339 Rfam CRISPR RNA direct repeat element RF01340 Rfam CRISPR RNA direct repeat element RF01341 Rfam CRISPR RNA direct repeat element RF01342 Rfam CRISPR RNA direct repeat element RF01343 Rfam CRISPR RNA direct repeat element RF01344 Rfam CRISPR RNA direct repeat element RF01345 Rfam CRISPR RNA direct repeat element RF01346 Rfam CRISPR RNA direct repeat element RF01347 Rfam CRISPR RNA direct repeat element RF01348 Rfam CRISPR RNA direct repeat element RF01349 Rfam CRISPR RNA direct repeat element RF01350 Rfam CRISPR RNA direct repeat element RF01351 Rfam CRISPR RNA direct repeat element RF01352 Rfam CRISPR RNA direct repeat element RF01353 Rfam CRISPR RNA direct repeat element RF01354 Rfam CRISPR RNA direct repeat element RF01355 Rfam CRISPR RNA direct repeat element RF01356 Rfam CRISPR RNA direct repeat element RF01357 Rfam CRISPR RNA direct repeat element RF01358 Rfam CRISPR RNA direct repeat element RF01359 Rfam CRISPR RNA direct repeat element RF01360 Rfam CRISPR RNA direct repeat element RF01361 Rfam CRISPR RNA direct repeat element RF01362 Rfam CRISPR RNA direct repeat element RF01363 Rfam CRISPR RNA direct repeat element RF01364 Rfam CRISPR RNA direct repeat element RF01365 Rfam CRISPR RNA direct repeat element RF01366 Rfam CRISPR RNA direct repeat element RF01367 Rfam CRISPR RNA direct repeat element RF01368 Rfam CRISPR RNA direct repeat element RF01369 Rfam CRISPR RNA direct repeat element RF01370 Rfam CRISPR RNA direct repeat element RF01371 Rfam CRISPR RNA direct repeat element RF01372 Rfam CRISPR RNA direct repeat element RF01373 Rfam CRISPR RNA direct repeat element RF01374 Rfam CRISPR RNA direct repeat element RF01375 Rfam CRISPR RNA direct repeat element RF01376 Rfam CRISPR RNA direct repeat element RF01377 Rfam CRISPR RNA direct repeat element RF01378 Rfam CRISPR RNA direct repeat element RF01379 Rfam CRISPR RNA direct repeat element RF01380 Rfam Human immunodeficiency virus type 1 major splice donor RF01381 Rfam HIV-1 stem-loop 3 Psi packaging signal RF01382 Rfam HIV-1 stem-loop 4 packaging signal RF01383 Rfam GRIK4 3 prime UTR element RF01384 Rfam Invasion gene-associated RNA RF01385 Rfam isrA Hfq binding RNA RF01386 Rfam isrB Hfq binding RNA RF01387 Rfam isrC Hfq binding RNA RF01388 Rfam isrD Hfq binding RNA RF01389 Rfam isrF Hfq binding RNA RF01390 Rfam isrG Hfq binding RNA RF01391 Rfam isrH Hfq binding RNA RF01392 Rfam isrI Hfq binding RNA RF01393 Rfam isrJ Hfq binding RNA RF01394 Rfam isrK Hfq binding RNA RF01395 Rfam isrL Hfq binding RNA RF01396 Rfam isrN Hfq binding RNA RF01397 Rfam isrO Hfq binding RNA RF01398 Rfam isrP Hfq binding RNA RF01399 Rfam isrQ Hfq binding RNA RF01400 Rfam istR Hfq binding RNA RF01401 Rfam rseX Hfq binding RNA RF01402 Rfam STnc150 Hfq binding RNA RF01403 Rfam STnc290 Hfq binding RNA RF01404 Rfam STnc440 Hfq binding RNA RF01405 Rfam STnc490k Hfq binding RNA RF01406 Rfam STnc500 Hfq binding RNA RF01407 Rfam STnc560 Hfq binding RNA RF01408 Rfam sraL Hfq binding RNA RF01409 Rfam STnc250 Hfq binding RNA RF01410 Rfam BsrC RF01411 Rfam BsrF RF01412 Rfam BsrG RF01413 Rfam microRNA miR-430 RF01414 Rfam Class I RNA RF01415 Rfam Flavivirus 3'UTR stem loop IV RF01416 Rfam NrrF RNA RF01417 Rfam Retroviral 3'UTR stability element RF01418 Rfam HIV pol-1 stem loop RF01419 Rfam Antisense RNA which regulates isiA expression RF01420 Rfam Small nucleolar RNA snoR113 RF01421 Rfam small nucleolar RNA snoR114 RF01422 Rfam small nucleolar RNA snoR116 RF01423 Rfam small nucleolar RNA snoR117 RF01424 Rfam small nucleolar RNA snoR118 RF01425 Rfam small nucleolar RNA snoR121 RF01426 Rfam small nucleolar RNA snoR126 RF01427 Rfam small nucleolar RNA snoR127 RF01428 Rfam small nucleolar RNA snoR128 RF01429 Rfam small nucleolar RNA snoR130 RF01430 Rfam small nucleolar RNA snoR134 RF01431 Rfam small nucleolar RNA snoR135 RF01432 Rfam small nucleolar RNA snoR143 RF01433 Rfam small nucleolar RNA snoR137 RF01434 Rfam small nucleolar RNA snR3 RF01435 Rfam small nucleolar RNA snR5 RF01436 Rfam small nucleolar RNA snR33 RF01437 Rfam small nucleolar RNA snR10 RF01438 Rfam small nucleolar RNA snR35 RF01439 Rfam small nucleolar RNA snR36 RF01440 Rfam small nucleolar RNA snR42 RF01441 Rfam small nulceolar RNA snR46 RF01442 Rfam small nucleolar RNA snR90 RF01443 Rfam small nucleolar RNA snR91 RF01444 Rfam small nucleolar RNA snR92 RF01445 Rfam small nucleolar RNA snR94 RF01446 Rfam small nucleolar RNA snR95 RF01447 Rfam small nucleolar RNA snR98 RF01448 Rfam small nucleolar RNA snR93 RF01449 Rfam small nucleolar RNA snR100 RF01450 Rfam small nucleolar RNA snR96 RF01451 Rfam small nucleolar RNA snR97 RF01452 Rfam small nucleolar RNA snR99 RF01453 Rfam 3'TE-DR1 translation enhancer element RF01454 Rfam 5'UTR enhancer element RF01455 Rfam Stem loopII regulatory element in POLB RF01456 Rfam Vibrio regulatory RNA of OmpA RF01457 Rfam Listeria sRNA rli22 RF01458 Rfam Listeria snRNA rli23 RF01459 Rfam Listeria sRNA rliE RF01460 Rfam Listeria sRNA rliH RF01461 Rfam Listeria sRNA rli22 RF01462 Rfam Listeria sRNA rli26 RF01463 Rfam Listeria sRNA rli27 RF01464 Rfam Listeria sRNA rliA RF01465 Rfam rli31 RF01466 Rfam Listeria sRNA rli34 RF01467 Rfam Listeria sRNA rli36 RF01468 Rfam Listeria sRNA rli32 RF01469 Rfam Listeria sRNA rli33 RF01470 Rfam Listeria sRNA rli38 RF01471 Rfam Listeria sRNA rliB RF01472 Rfam Listeria sRNA rli40 RF01473 Rfam Listeria sRNA rli41 RF01474 Rfam Listeia sRNA rli42 RF01475 Rfam Listeria snRNA rli45 RF01476 Rfam Listeria sRNA rliF RF01477 Rfam Listeria sRNA rli43 RF01478 Rfam Listeria sRNA rli47 RF01479 Rfam Listeria sRNA rli48 RF01480 Rfam Listeria sRNA rli52 RF01481 Rfam Listeria sRNA rli53 RF01482 Rfam AdoCbl riboswitch RF01483 Rfam Listeria sRNA rli56 RF01484 Rfam Listeria sRNA rli59 RF01485 Rfam Listeria sRNA rli61 RF01486 Rfam Listeria sRNA rli62 RF01487 Rfam Listeria sRNA rliI RF01488 Rfam Listeria sRNA rli49 RF01489 Rfam Listeria sRNA sbrA RF01490 Rfam Listeria snRNA rli51 RF01491 Rfam Listeria sRNA rli54 RF01492 Rfam Listeria sRNA rli28 RF01493 Rfam Listeria sRNA rli37 RF01494 Rfam Listeria sRNA rliD RF01495 Rfam Human acetyl-coA cholesterol acyltransferase mRNA RF01496 Rfam A. fumigatus sRNA Afu_182 RF01497 Rfam ALIL pseudoknot RF01498 Rfam A. fumigatus snoRNA Afu_190 RF01499 Rfam A. fumigatus snoRNA Afu_191 RF01500 Rfam A. fumigatus snoRNA Afu_198 RF01501 Rfam A. fimigatus snoRNA Afu_199 RF01502 Rfam Fungal signal recognition particle RNA RF01503 Rfam A. fumigatus sRNA Afu_203 RF01504 Rfam A. fumigatus sRNA Afu_254 RF01505 Rfam A. fumigatus snoRNA Afu_264 RF01506 Rfam A. fumigatus snoRNA Afu_294 RF01507 Rfam A. fimigatus snoRNA Afu_298 RF01508 Rfam Barley yellow dwarf virus 5'UTR RF01509 Rfam A. fumigatus snoRNA Afu_300 RF01510 Rfam M. florum riboswitch RF01511 Rfam A. fumigatus snoRNA Afu_304 RF01512 Rfam A. fumigatus sRNA Afu_309 RF01513 Rfam A. fumigatus snoRNA Afu_335 RF01514 Rfam A. fumigatus snoRNA Afu_513 RF01515 Rfam A. fumigatus snoRNA Afu_514 RF01516 Rfam Human herpesvirus 1 small nucleolar RNA RF01517 Rfam iscR stability element RF01518 Rfam NoRC assoicated RNA, pRNA RF01519 Rfam Cauldobacter sRNA CC0196 RF01520 Rfam caulobacter sRNA CC0734 RF01521 Rfam caulobacter sRNA CC1840 RF01522 Rfam Trypanosomatid snoRNA TB10Cs1H1 RF01523 Rfam Trypanosomatid snoRNA TB10Cs1H2 RF01524 Rfam Trypanosomatid snoRNA TB10cs1H3 RF01525 Rfam Trypanosomatid snoRNA TB10Cs2H1 RF01526 Rfam C. elegans snoRNA ceN106 RF01527 Rfam caulobacter sRNA CC3510 RF01528 Rfam caulobacter sRNA CC3513 RF01529 Rfam Cauldobacter sRNA CC3552 RF01530 Rfam caulobacter sRNA CC3664 RF01531 Rfam Trypanosomatid snoRNA TB10Cs3H1 RF01532 Rfam Trypanosomatid snoRNA TB10Cs3H2 RF01533 Rfam Trypanosomatid snoRNA TB10Cs4H3 RF01534 Rfam Trypanosomatid snoRNA TB10Cs4H4 RF01535 Rfam Trypanosomatid snoRNA TB10Cs5H2 RF01536 Rfam Trypanosomatid snoRNA TB10Cs5H3 RF01537 Rfam Trypanosomatid snoRNA TB11Cs2H1 RF01538 Rfam Trypanosomatid snoRNA TB11Cs3H1 RF01539 Rfam Trypanosomatid snoRNA TB11Cs4H1 RF01540 Rfam Trypanosomatid snoRNA TB11Cs4H2 RF01541 Rfam Trypanosomatid snoRNA TB11Cs4H3 RF01542 Rfam Trypanosomatid snoRNA TB11Cs5H1 RF01543 Rfam Trypanosomatid snoRNA TB11Cs5H2 RF01544 Rfam Trypanosomatid snoRNA TB11Cs5H3 RF01545 Rfam Trypanosomatid snoRNA TB3Cs2H1 RF01546 Rfam Trypanosomatid snoRNA TB6Cs1H1 RF01547 Rfam Trypanosomatid snoRNA TB6Cs1H3 RF01548 Rfam Trypanosomatid snoRNA TB6Cs1H4 RF01549 Rfam Trypanosomatid snoRNA TB8Cs2H1 RF01550 Rfam Trypanosomatid snoRNA TB8Cs3H1 RF01551 Rfam Trypanosomatid snoRNA TB8Cs4H2 RF01552 Rfam Trypanosomatid snoRNA TB9Cs1H2 RF01553 Rfam Trypanosomatid snoRNA TB9Cs1H3 RF01554 Rfam Trypanosomatid snoRNA TB9Cs2H1 RF01555 Rfam Trypanosomatid snoRNA TB9Cs3H1 RF01556 Rfam Trypanosomatid snoRNA TB9Cs3H2 RF01557 Rfam Trypanosomatid snoRNA TB9Cs4H1 RF01558 Rfam Trypanosomatid snoRNA TB9Cs4H2 RF01559 Rfam D. discoideum snoRNA DdR1 RF01560 Rfam D. discoideum snoRNA DdR10 RF01561 Rfam D. discoideum snoRNA DdR11 RF01562 Rfam D. discoideum snoRNA DdR12 RF01563 Rfam D. discoideum snoRNA DdR13 RF01564 Rfam D. discoideum snoRNA DdR14 RF01565 Rfam D. discoideum snoRNA DdR15 RF01566 Rfam D. discoideum snoRNA DdR16 RF01567 Rfam D. discoideum snoRNA DdR17 RF01568 Rfam D. discoideum snoRNA DdR18 RF01569 Rfam D. discoideum snoRNA DdR2 RF01570 Rfam D. discoideum signal recognition particle RF01571 Rfam D. discoideum class II sRNA RF01572 Rfam D. discoideum snoRNA DdR4 RF01573 Rfam D. discoideum snoRNA DdR5 RF01574 Rfam D. discoideum snoRNA DdR6 RF01575 Rfam D. discoideum snoRNA Dd7 RF01576 Rfam D. discoideum snoRNA DdR8 RF01577 Rfam Plasmodium RNase_P RF01578 Rfam Plasmodium RNA of unkown function RUF1 RF01579 Rfam Plasmodium RNA of unknown function RUF2 RF01580 Rfam Plasmodium RNA of unkown function RU6-F3 RF01581 Rfam Plasmodium RNA of unkown function RUF6-5 RF01582 Rfam RNA of unknown function RUF4 RF01583 Rfam small nucleolar RNA snoR01 RF01584 Rfam small nucleolar RNA snoR03 RF01585 Rfam small nucleolar RNA snoR07 RF01586 Rfam small nucleolar RNA snoR09 RF01587 Rfam small nucleolar RNA snoR10 RF01588 Rfam small nucleolar RNA snoR13 RF01589 Rfam small nucleolar RNA snoR11 RF01590 Rfam small nucleolar RNA snoR14 RF01591 Rfam small nucleolar RNA snoR15 RF01592 Rfam small nucleolar RNA snoR17 RF01593 Rfam small nucleolar RNA snoR16 RF01594 Rfam small nucleolar RNA snoR18 RF01595 Rfam small nucleolar RNA snoR19 RF01596 Rfam small nucleolar RNA snoR20 RF01597 Rfam small nucleolar RNA snoR22 RF01598 Rfam small nucleolar RNA snoR23 RF01599 Rfam small nucleolar RNA snoR24 RF01600 Rfam small nucleolar RNA snoR25 RF01601 Rfam small nucleolar RNA snoR26 RF01602 Rfam small nucleolar RNA snoR27 RF01603 Rfam small nucleolar RNA snoR29 RF01604 Rfam small nucleolar RNA snoR28 RF01605 Rfam small nucleolar RNA snoR30 RF01606 Rfam small nucleolar RNA snoR31 RF01607 Rfam C. elegans snoRNA ceN100 RF01608 Rfam C. elegans snoRNA ceN80 RF01609 Rfam C. elegans snoRNA ceN103 RF01610 Rfam C. elegans snoRNA ceN104 RF01611 Rfam C. elegans snoRNA ceN108 RF01612 Rfam C. elegans snoRNA ceN105 RF01613 Rfam C. elegans snoRNA ceN109 RF01614 Rfam C. elgans snoRNA ceN110 RF01615 Rfam C. elegans snoRNA ceN111 RF01617 Rfam C. elegans snoRNA ceN113 RF01618 Rfam C. elegans snoRNA ceN114 RF01619 Rfam C. elegans sRNA ceN115 RF01620 Rfam C. elegans snoRNA ceN125 RF01621 Rfam C. elegans snoRNA ceN126 RF01622 Rfam C. elegans snoRNA ceN22 RF01623 Rfam C. elegans sRNA ceN23-1 RF01624 Rfam C. elegans snoRNA ceN27 RF01625 Rfam C. elegans snoRNA ceN28 RF01626 Rfam C. elegans snoRNA ceN30 RF01627 Rfam C. elegans snoRNA ceN36-1 RF01628 Rfam C. elegans snoRNA ceN38 RF01629 Rfam C. elegans snoRNA ceN39 RF01630 Rfam C. elegans snoRNA ceN40 RF01631 Rfam C. elegans snoRNA ceN41 RF01632 Rfam C. elegans snoRNA ceN42 RF01633 Rfam C. elegans snoRNA ceN43 RF01634 Rfam C. elegans snoRNA ceN44 RF01635 Rfam C. elegans snoRNA ceN45 RF01636 Rfam C. elegans snoRNA ceN46 RF01637 Rfam C. elegans snoRNA ceN47 RF01638 Rfam C. elegans snoRNA ceN48 RF01639 Rfam C. elegans snoRNA ceN49 RF01640 Rfam C. elegans snoRNA ceN51 RF01641 Rfam C. elegans snoRNA ceN53 RF01642 Rfam C. elegans snoRNA ceN54 RF01643 Rfam C. elegans sRNA ceN56 RF01644 Rfam C. elegans snoRNA ceN59 RF01645 Rfam C. elegans snoRNA ceN58 RF01646 Rfam C. elegans snoRNA ceN63 RF01647 Rfam C. elegans snoRNA ceN61 RF01648 Rfam C. elegans snoRNA ceN65 RF01649 Rfam C. elegans snoRNA ceN67 RF01650 Rfam C. elegans snoRNA ceN48 RF01651 Rfam C. elegans snoRNA ceN69 RF01652 Rfam C. elegans snoRNA ceN70 RF01653 Rfam C. elegans snoRNA ceN80 RF01654 Rfam C. elegans snoRNA ceN82 RF01655 Rfam C. elegans snoRNA ceN84 RF01656 Rfam C. elegans sRNA ceN72-3_ceN74-2 RF02278 Rfam Betaproteobacteria toxic small RNA RF01658 Rfam C. elegans snoRNA ceN81 RF01659 Rfam C. elegans snoRNA ceN86 RF01660 Rfam C. elegans snoRNA ceN88 RF01661 Rfam C. elegans snoRNA ceN92 RF01662 Rfam C. elegans snoRNA ceN89 RF01663 Rfam C. elegans sRNA ceN93 RF01664 Rfam C. elegans snoRNA ceN101 RF01665 Rfam Pseudomonas sRNA P13 RF01666 Rfam Drosophila rox2 ncRNA RF01667 Rfam Drosophila rox1 ncRNA RF01668 Rfam Pseudomonas sRNA P10 RF01669 Rfam Pseudomonas sRNA P14 RF01670 Rfam Pseudomonas sRNA P17 RF01671 Rfam Pseudomonas sRNA P18 RF01672 Rfam Psudomonas sRNA P2 RF01673 Rfam PhrS RF02273 Rfam FsrA RF01674 Rfam Pseudomonas sRNA P27 RF01675 Rfam Pseudomonas sRNA CrcZ RF01676 Rfam Pseudomonas sRNA P31 RF01677 Rfam Pseudomonas sRNA P35 RF01678 Rfam Pseudomonas sRNA P37 RF01679 Rfam Pseudomonas sRNA P36 RF01680 Rfam Pseudomonas sRNA P5 RF01681 Rfam Pseudomonas sRNA P4 RF01682 Rfam Pseudomonas sRNA P8 RF01683 Rfam Pseudomonas sRNA P6 RF01684 Rfam MALAT1-associated small cytoplasmic RNA/MEN beta RNA RF01685 Rfam 6S-Flavo RNA RF01686 Rfam Acido-1 RNA RF01687 Rfam Acido-Lenti-1 RNA RF01688 Rfam Actino-pnp RNA RF01689 Rfam AdoCbl variant RNA RF01690 Rfam Bacillaceae-1 RNA RF01691 Rfam Bacillus-plasmid RNA RF01692 Rfam Bacteroidete tryptophan peptide leader RNA RF01693 Rfam Bacteroidales-1 RNA RF01694 Rfam Bacteroides-1 RNA RF01695 Rfam C4 antisense RNA RF01696 Rfam Chlorobi-1 RNA RF01697 Rfam Chlorobi-RRM RNA RF01698 Rfam Chloroflexi-1 RNA RF01699 Rfam Clostridiales-1 RNA RF01700 Rfam Collinsella-1 RNA RF01701 Rfam Cyano-1 RNA RF01702 Rfam Cyano-2 RNA RF01703 Rfam Dictyoglomi-1 RNA RF01704 Rfam Downstream peptide RNA RF01705 Rfam Flavo-1 RNA RF01706 Rfam Gut-1 RNA RF01707 Rfam JUMPstart RNA RF01708 Rfam L17 ribosomal protein downstream element RF01709 Rfam Lacto-rpoB RNA RF01710 Rfam Lacto-usp RNA RF01711 Rfam Lnt RNA RF01712 Rfam Methylobacterium-1 RNA RF01713 Rfam Moco-II RNA RF01714 Rfam Ocean-V RNA RF01715 Rfam Pedo-repair RNA RF01716 Rfam PhotoRC-I RNA RF01717 Rfam PhotoRC-II RNA RF01718 Rfam Polynucleobacter-1 RNA RF01719 Rfam Pseudomon-1 RNA RF01720 Rfam Pseudomon-Rho RNA RF01721 Rfam Pseudomon-groES RNA RF01722 Rfam Pyrobac-1 RNA RF01723 Rfam Rhizobiales-2 RNA RF01724 Rfam SAM-Chlorobi RNA RF01725 Rfam SAM-I/IV variant riboswitch RF01726 Rfam SAM-II long loop RF01727 Rfam SAM/SAH riboswitch RF01728 Rfam STAXI RNA RF01729 Rfam Termite-flg RNA RF01730 Rfam Termite-leu RNA RF01731 Rfam TwoAYGGAY RNA RF01732 Rfam asd RNA RF01733 Rfam atoC RNA RF01734 Rfam crcB RNA RF01735 Rfam epsC RNA RF01736 Rfam flg-Rhizobiales RNA RF01737 Rfam flpD RNA RF01738 Rfam gabT RNA RF01739 Rfam glnA RNA RF01740 Rfam gyrA RNA RF01741 Rfam hopC RNA RF01742 Rfam lactis-plasmid RNA RF01743 Rfam leu/phe leader RNA from Lactococcus lactis RF01744 Rfam livK RNA RF01745 Rfam manA RNA RF01746 Rfam mraW RNA RF01747 Rfam msiK RNA RF01748 Rfam nuoG RNA RF01749 Rfam pan motif RF01750 Rfam pfl RNA RF01751 Rfam potC RNA RF01752 Rfam psaA RNA RF01753 Rfam psbNH RNA RF01754 Rfam radC RNA RF01755 Rfam rmf RNA RF01756 Rfam rne-II RNA RF01757 Rfam sbcD RNA RF01758 Rfam sucA-II RNA RF01759 Rfam sucC RNA RF01760 Rfam traJ-II RNA RF01761 Rfam wcaG RNA RF01762 Rfam Whalefall-1 RNA RF01763 Rfam ykkC-III RNA RF01764 Rfam yjdF RNA RF01765 Rfam srg1 RF01766 Rfam cspA thermoregulator RF01767 Rfam SMK box translational riboswitch RF01768 Rfam ribosomal frameshift site RF01769 Rfam Enterobacteria greA leader RF01770 Rfam Gammaprotebacteria rimP leader RF01771 Rfam Enterobacteria rnk leader RF01772 Rfam Pseudomonas rnk leader RF01773 Rfam Pseudomonas rpsL leader RF01774 Rfam Rickettsia rpsL leader RF01775 Rfam RNA S.aureus Orsay G RF01776 Rfam RNA anti-toxin A RF01778 Rfam Embryonic ventral forebrain-2 long ncRNA RF01779 Rfam AS1726 sRNA RF01780 Rfam AS1890 sRNA RF01781 Rfam ASdes TB sRNA RF01782 Rfam ASpks TB sRNA RF01783 Rfam M. tuberculosis B11 RF01784 Rfam bablM sRNA RF01785 Rfam ribosomal frameshift site RF01786 Rfam Cyclic di-GMP-II riboswitch RF01787 Rfam drz-agam-1 riboswitch RF01788 Rfam drz-agam-2-2 riboswitch RF01789 Rfam Epstein-Barr virus EBER1 RF01790 Rfam ribosomal frameshift site RF01791 Rfam F6 TB sRNA RF01792 Rfam ribosomal frameshift site RF01793 Rfam ffh sRNA RF01794 Rfam sok antitoxin RF01795 Rfam FourU thermometer RNA element RF01796 Rfam Fumarate/nitrate reductase regulator sRNA RF01797 Rfam Fst antitoxin sRNA RF01798 Rfam G2 RF01800 Rfam growth arrested DNA-damage inducible gene 7 RF01802 Rfam Herpesvirus saimiri U RNA1/RNA2 RF01803 Rfam Editing element of GABA-3 exon 9 RF01804 Rfam Lambda phage CIII thermoregulator element RF01807 Rfam GIR1 branching ribozyme RF01808 Rfam MicX Vibrio cholerae sRNA RF01809 Rfam SymR antitoxin RF01810 Rfam pntA sRNA RF01811 Rfam Plasmid transferred anti-sense RNA RF01812 Rfam Pxr regulatory sRNA RF01813 Rfam rdlD antitoxin RF01814 Rfam rhtB sRNA RF01815 Rfam rpsB sRNA RF01816 Rfam RNA Staph. aureus A RF01817 Rfam RNA Staph. aureus A RF01818 Rfam RNA Staph. aureus C RF01819 Rfam RNA Staph. aureus D RF01820 Rfam RNA Staph. aureus E RF01821 Rfam RNA Staph. aureus H RF01822 Rfam RNA Staph. aureus A RF01823 Rfam rpsL sRNA RF01824 Rfam RNA of unknown function 20 RF01825 Rfam RNA of unknown function 21 RF01826 Rfam SAM-V riboswitch RF01827 Rfam SAR11_0636 sRNA RF01828 Rfam Small pathogenicity island RNA D RF01829 Rfam sR6 snoRNA RF01830 Rfam Salmonella enterica Typhi npcRNA 44 RF01831 Rfam THF riboswitch RF01832 Rfam Repression of heat shock gene expression (ROSE) element RF01833 Rfam ribosomal frameshift site RF01834 Rfam ribosomal frameshift site RF01835 Rfam ribosomal frameshift site RF01836 Rfam ribosomal frameshift site RF01837 Rfam togavirus ribosomal frameshift element RF01838 Rfam sobemovirus ribosomal frameshift elemental RF01839 Rfam eastern equine encephalitis ribosomal frameshift element RF01840 Rfam ribosomal frameshift element RF01841 Rfam venezuelan equine encephalitis virus ribosomal frameshift element RF01842 Rfam mycoplasma ribosomal frameshift element RF01843 Rfam neiserria ribosomal frameshift element RF01844 Rfam SmY spliceosomal RNA RF01845 Rfam Early nodulin 40 RF01846 Rfam Fungal small nucleolar RNA U3 RF01847 Rfam Plant small nucleolar RNA U3 RF01848 Rfam ACEA small nucleolar RNA U3 RF01849 Rfam Alphaproteobacteria transfer-messenger RNA RF01850 Rfam Betaproteobacteria transfer-messenger RNA RF01851 Rfam Cyanobacteria transfer-messenger RNA RF01852 Rfam Selenocysteine transfer RNA RF01853 Rfam Mitochondrial DNA control region secondary structure A RF01854 Rfam Bacterial large signal recognition particle RNA RF01855 Rfam Plant signal recognition particle RNA RF01856 Rfam Protozoan signal recognition particle RNA RF01857 Rfam Archaeal signal recognition particle RNA RF01858 Rfam RNA Staph. aureus F RF01859 Rfam Phenylalanine leader peptide RF01860 Rfam A. fumigatus snoRNA Afu_455 RF01861 Rfam Trypanosomatid snoRNA TB9Cs1H1 RF01862 Rfam Trypanosomatid snoRNA TB10Cs4H2 RF01863 Rfam Trypanosomatid snoRNA TB10Cs2H2 RF01864 Rfam small nucleolar RNA snoR21 RF01865 Rfam Manganese dependent ribozyme in Vg1 mRNA RF01866 Rfam C. elegans snoRNA ceN33 RF01867 Rfam caulobacter sRNA CC2171 RF01868 Rfam MAP kinase and growth arrest RNA conserved region 1 RF01869 Rfam MAP kinase and growth arrest RNA conserved region 2 RF01870 Rfam Maternally expressed 3 conserved region 1 RF01871 Rfam Metastasis associated lung adenocarcinoma transcript 1 RF01872 Rfam Maternally expressed 3 conserved region 2 RF01873 Rfam Polled intersex syndrome regulated transcript 1 RF01874 Rfam Myocardial infarction associated transcript exon 1 RF01875 Rfam Myocardial infarction associated transcript exon 5 conserved region 1 RF01876 Rfam Myocardial infarction associated transcript exon 5 conserved region 2 RF01877 Rfam Myocardial infarction associated transcript exon 5 conserved region 3 RF01878 Rfam PRINS RNA RF01879 Rfam Non-coding RNA LOC285194 RF01880 Rfam X-chromosome inactivation gene exon 1 RF01881 Rfam X-chromosome inactivation gene exon 4 RF01882 Rfam Taurine upregulated gene 1 conserved region 1 RF01883 Rfam Taurine upregulated gene 1 conserved region 2 RF01884 Rfam Non-coding RNA BC040587 RF01885 Rfam Heat shock gene hsromega conserved region 1 RF01886 Rfam Heat shock gene hsromega conserved region 2 RF01887 Rfam Embryonic ventral forebrain RNA 1 conserved region 1 RF01888 Rfam Embryonic ventral forebrain RNA 1 conserved region 2 RF01889 Rfam LincRNA-p21 conserved region 1 RF01890 Rfam LincRNA-p21 conserved region 2 RF01891 Rfam Taurine upregulated gene 1 conserved region 3 RF01892 Rfam Taurine upregulated gene 1 conserved region 4 RF01893 Rfam Prostate cancer antigen RNA 3 conserved region 1 RF01894 Rfam Prostate cancer antigen RNA 3 conserved region 2 RF01895 Rfam microRNA mir-193 RF01896 Rfam microRNA mir-142 RF01897 Rfam microRNA mir-188 RF01898 Rfam microRNA mir-363 RF01899 Rfam microRNA mir-2241 RF01900 Rfam microRNA mir-2024 RF01901 Rfam microRNA mir-284 RF01902 Rfam microRNA MIR439 RF01903 Rfam microRNA mir-500 RF01904 Rfam HOTAIR conserved region 1 RF01905 Rfam HOTAIR conserved region 2 RF01906 Rfam HOTAIR conserved region 3 RF01907 Rfam HOTAIR intron conserved region 4 RF01908 Rfam HOTAIR intron conserved region 5 RF01909 Rfam CDKN2B antisense RNA 1 intronic convserved region RF01910 Rfam microRNA mir-506 RF01911 Rfam microRNA MIR2118 RF01912 Rfam microRNA mir-2807 RF01913 Rfam microRNA mir-2778 RF01914 Rfam microRNA mir-932 RF01915 Rfam microRNA mir-2238 RF01916 Rfam microRNA mir-988 RF01917 Rfam microRNA MIR2587 RF01918 Rfam microRNA mir-1249 RF01919 Rfam microRNA mir-1419 RF01920 Rfam microRNA mir-764 RF01921 Rfam microRNA mir-1296 RF01922 Rfam microRNA mir-654 RF01923 Rfam microRNA mir-711 RF01924 Rfam microRNA mir-2774 RF01925 Rfam microRNA MIR1428 RF01926 Rfam microRNA mir-981 RF01927 Rfam microRNA MIR1222 RF01928 Rfam Maternal intergenic circadian oscillating RNA 1 RF01929 Rfam Bithoraxoid conserved region 1 RF01930 Rfam Bithoraxoid conserved region 2 RF01931 Rfam Bithoraxoid conserved region 3 RF01932 Rfam Bithoraxoid conserved region 4 RF01933 Rfam Bithoraxoid conserved region 5 RF01934 Rfam Bithoraxoid conserved region 6 RF01935 Rfam Bithoraxoid conserved region 7 RF01936 Rfam microRNA mir-63 RF01937 Rfam microRNA mir-2780 RF01938 Rfam microRNA mir-1251 RF01939 Rfam microRNA mir-761 RF01940 Rfam microRNA hvt-mir-H9 RF01941 Rfam microRNA MIR1223 RF01942 Rfam microRNA mir-1937 RF01943 Rfam microRNA mir-999 RF01944 Rfam microRNA mir-2518 RF01945 Rfam microRNA mir-1388 RF01946 Rfam KCNQ1 overlapping transcript 1 conserved region 1 RF01947 Rfam KCNQ1 overlapping transcript 1 conserved region 2 RF01948 Rfam KCNQ1 overlapping transcript 1 conserved region 3 RF01950 Rfam KCNQ1 overlapping transcript 1 conserved region 5 RF01951 Rfam SOX2 overlapping transcript exon 1 RF01952 Rfam SOX2 overlapping transcript exon 2 RF01953 Rfam SOX2 overlapping transcript exon 3 RF01954 Rfam SOX2 overlapping transcript exon 4 RF01955 Rfam Nuclear enriched abundant transcript 1 conserved region 1 RF01956 Rfam Nuclear enriched abundant transcript 1 conserved region 2 RF01957 Rfam Nuclear enriched abundant transcript 1 conserved region 3 RF01958 Rfam EGOT conserved intronic region RF01961 Rfam KCNQ1 downstream neighbour RF01962 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 1 RF01963 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 2 RF01964 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 3 RF01965 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 4 RF01966 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 5 RF01967 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 6 RF01968 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 7 RF01969 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 8 RF01970 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 9 RF01971 Rfam Rhabdomyosarcoma 2 associated transcript conserved region 10 RF01972 Rfam H19 conserved region 1 RF01973 Rfam H19 conserved region 2 RF01974 Rfam H19 conserved region 3 RF01975 Rfam HOX antisense intergenic RNA myeloid 1 conserved region 1 RF01976 Rfam HOX antisense intergenic RNA myeloid 1 conserved region 2 RF01977 Rfam HOX antisense intergenic RNA myeloid 1 conserved region 3 RF01978 Rfam HOX antisense intergenic RNA myeloid 1 conserved region 4 RF01979 Rfam HOX antisense intergenic RNA myeloid 1 conserved region 5 RF01980 Rfam Nkx2-2 antisense RF01981 Rfam Prostate-specific transcript 1 RF01982 Rfam Pyrrolysine insertion sequence 1 RF01983 Rfam Pregnancy induced noncoding RNA RF01984 Rfam ZEB2 antisense RNA 1 conserved region 1 RF01985 Rfam ZEB2 antisense RNA 1 conserved region 2 RF01986 Rfam ZEB2 antisense RNA 1 conserved region 3 RF01987 Rfam ZEB2 antisense RNA 1 conserved region 4 RF01988 Rfam Selenocysteine insertion sequence 2 RF01989 Rfam Selenocysteine insertion sequence 3 RF01990 Rfam Selenocysteine insertion sequence 4 RF01991 Rfam Selenocysteine insertion sequence 5 RF01992 Rfam Viral integration site 1 RF01996 Rfam microRNA mir-995 RF01997 Rfam microRNA mir-969 RF01998 Rfam Group II catalytic intron D1-D4-1 RF01999 Rfam Group II catalytic intron D1-D4-2 RF02000 Rfam microRNA MIR1846 RF02001 Rfam Group II catalytic intron D1-D4-3 RF02002 Rfam microRNA mir-720 RF02003 Rfam Group II catalytic intron D1-D4-4 RF02004 Rfam Group II catalytic intron D1-D4-5 RF02005 Rfam Group II catalytic intron D1-D4-6 RF02006 Rfam microRNA mir-1253 RF02007 Rfam microRNA mir-1237 RF02008 Rfam microRNA mir-621 RF02009 Rfam microRNA mir-987 RF02010 Rfam microRNA mir-3180 RF02011 Rfam microRNA mir-575 RF02012 Rfam Group II catalytic intron D1-D4-7 RF02013 Rfam microRNA mir-1280 RF02014 Rfam microRNA mir-1178 RF02015 Rfam microRNA mir-1287 RF02016 Rfam microRNA mir-1183 RF02017 Rfam microRNA mir-1912 RF02018 Rfam microRNA mir-1207 RF02019 Rfam microRNA mir-1265 RF02020 Rfam microRNA mir-25 RF02021 Rfam microRNA mir-3179 RF02022 Rfam microRNA mir-1275 RF02023 Rfam microRNA mir-1208 RF02024 Rfam microRNA mir-1180 RF02025 Rfam microRNA mir-3017 RF02026 Rfam microRNA mir-2833 RF02027 Rfam microRNA MIR2907 RF02028 Rfam microRNA mir-1827 RF02029 Rfam sraA RF02030 Rfam tp2 RF02031 Rfam tpke11 RF02032 Rfam Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA RF02033 Rfam HNH endonuclease-associated RNA and ORF (HEARO) RNA RF02034 Rfam IMES-1 RNA motif RF02035 Rfam IMES-2 RNA motif RF02036 Rfam IMES-3 RNA motif RF02037 Rfam IMES-4 RNA motif RF02038 Rfam SPRY4-IT1 conserved region 1 RF02039 Rfam SPRY4-IT1 conserved region 2 RF02040 Rfam HOXA transcript at the distal tip, conserved region 1 RF02041 Rfam HOXA transcript at the distal tip, conserved region 2 RF02042 Rfam HOXA transcript at the distal tip, conserved region 3 RF02043 Rfam HOXA transcript at the distal tip, conserved region 4 RF02044 Rfam CDKN2B antisense RNA 1 convserved region 2 RF02045 Rfam CDKN2B antisense RNA 1 convserved region 3 RF02046 Rfam Sphinx_ conserved region 1 RF02047 Rfam Sphinx conserved region 2 RF02048 Rfam Salmonella enterica conserved region STnc30 RF02049 Rfam Salmonella enterica sRNA STnc460 RF02050 Rfam Salmonella enterica sRNA STnc470 RF02051 Rfam Enterobacterial sRNA STnc450 RF02052 Rfam Enterobacterial sRNA STnc630 RF02053 Rfam Enterobacterial sRNA STnc430 RF02054 Rfam Salmonella enterica sRNA STnc420 RF02055 Rfam Enterobacterial sRNA STnc380 RF02056 Rfam Salmonella sRNA STnc390 RF02057 Rfam Salmonella enterica sRNA STnc40 RF02058 Rfam Gammaproteobacterial sRNA STnc400 RF02059 Rfam Salmonella enterica sRNA STnc40 RF02060 Rfam Enterobacterial sRNA STnc410 RF02061 Rfam microRNA mir-301 RF02062 Rfam Salmonella enterica sRNA STnc361 RF02063 Rfam Salmonella enterica sRNA STnc350 RF02064 Rfam Enterobacterial sRNA STnc370 RF02065 Rfam Enterobacterial sRNA STnc340 RF02066 Rfam Salmonella enterica sRNA STnc320 RF02067 Rfam Salmonella enterica sRNA STnc310 RF02068 Rfam Enterobacterial sRNA STnc480 RF02069 Rfam Enterobacterial sRNA STnc70 RF02070 Rfam Salmonella enterica sRNA STnc300 RF02071 Rfam Salmonella enterica sRNA STnc280 RF02072 Rfam Salmonella enterica sRNA STnc590 RF02073 Rfam Salmonella enterica sRNA STnc260 RF02074 Rfam Enterobacterial sRNA STnc240 RF02075 Rfam Enterobacterial sRNA STnc230 RF02076 Rfam Gammaproteobacterial sRNA STnc100 RF02077 Rfam Salmonella enterica sRNA STnc220 RF02078 Rfam Salmonella enterica sRNA STnc210 RF02079 Rfam Enterobacterial sRNA STnc180 RF02080 Rfam Salmonella enterica sRNA STnc170 RF02081 Rfam Enterobacterial sRNA STnc550 RF02082 Rfam Enterobacterial sRNA STnc540 RF02083 Rfam OrzO-P RNA antitoxin family RF02084 Rfam Enterobacteria sRNA STnc130 RF02085 Rfam Yellow-achaete intergenic RNA conserved region 1 RF02086 Rfam Yellow-achaete intergenic RNA conserved region 2 RF02087 Rfam Yellow-achaete intergenic RNA conserved region 3 RF02088 Rfam Enterobacterial sRNA STnc510 RF02089 Rfam CLRN1 antisense RNA 1 conserved region RF02090 Rfam DAOA antisense RNA 1 conserved region 1 RF02091 Rfam DAOA antisense RNA 1 conserved region 2 RF02092 Rfam mir-2970 microRNA precursor RF02093 Rfam mir-2968 microRNA precursor RF02094 Rfam mir-1803 microRNA precursor RF02095 Rfam mir-2985-2 microRNA precursor RF02096 Rfam mir-2973 microRNA precursor RF02097 Rfam mir-1662 microRNA precursor RF02098 Rfam DiGeorge syndrome critical region gene 5 conserved region RF02099 Rfam rivX sRNA RF02100 Rfam Translational regulator of tfoXVC RF02101 Rfam Highly up-regulated in liver cancer conserved region RF02102 Rfam Disrupted in schizophrenia 2 conserved region RF02103 Rfam Deleted in lymphocytic leukemia 1 conserved region 1 RF02104 Rfam Deleted in lymphocytic leukemia 1 conserved region 2 RF02105 Rfam Deleted in lymphocytic leukemia 2 conserved region 1 RF02106 Rfam Deleted in lymphocytic leukemia 2 conserved region 2 RF02107 Rfam Deleted in lymphocytic leukemia 2 conserved region 3 RF02108 Rfam Deleted in lymphocytic leukemia 2 conserved region 4 RF02109 Rfam Deleted in lymphocytic leukemia 2 conserved region 5 RF02110 Rfam Deleted in lymphocytic leukemia 2 conserved region 6 RF02111 Rfam IS009 RF02112 Rfam DLG2 antisense RNA 1 conserved region 1 RF02113 Rfam DLG2 antisense RNA 1 conserved region 2 RF02114 Rfam FAM13A antisense RNA 1 conserved region 1 RF02115 Rfam FAM13A antisense RNA 1 conserved region 2 RF02116 Rfam FAS antisense RNA 1 conserved region RF02117 Rfam FMR1 antisense RNA 1 conserved region 1 RF02118 Rfam FMR1 antisense RNA 1 conserved region 2 RF02119 Rfam FTX transcript, XIST regulator conserved region 1 RF02120 Rfam FTX transcript, XIST regulator conserved region 2 RF02121 Rfam FTX transcript, XIST regulator conserved region 3 RF02122 Rfam FTX transcript, XIST regulator conserved region 5 RF02123 Rfam FTX transcript, XIST regulator conserved region 4 RF02124 Rfam JPX transcript, XIST activator conserved region 1 RF02125 Rfam JPX transcript, XIST activator conserved region 2 RF02126 Rfam Ghrelin opposite strand RNA conserved region RF02127 Rfam GNAS antisense RNA 1 conserved region 1 RF02128 Rfam GNAS antisense RNA 1 conserved region 2 RF02129 Rfam GNAS antisense RNA 1 conserved region 3 RF02130 Rfam GNAS antisense RNA 1 conserved region 4 RF02131 Rfam GNAS antisense RNA 1 conserved region 5 RF02132 Rfam HOXB13 antisense RNA 1 conserved region 1 RF02133 Rfam HOXB13 antisense RNA 1 conserved region 2 RF02134 Rfam HTT antisense RNA 1 conserved region 1 RF02135 Rfam HTT antisense RNA 1 conserved region 2 RF02136 Rfam HTT antisense RNA 1 conserved region 3 RF02137 Rfam HOXA11 antisense RNA 1 conserved region 1 RF02138 Rfam HOXA11 antisense RNA 1 conserved region 2 RF02139 Rfam HOXA11 antisense RNA 1 conserved region 3 RF02140 Rfam HOXA11 antisense RNA 1 conserved region 4 RF02141 Rfam HOXA11 antisense RNA 1 conserved region 5 RF02142 Rfam HOXA11 antisense RNA 1 conserved region 6 RF02143 Rfam Hydatidiform mole associated and imprinted conserved region 1 RF02144 Rfam rsmX RF02145 Rfam Maternally expressed 8 exon 1 RF02146 Rfam Maternally expressed 8 exon 2 RF02147 Rfam Maternally expressed 8 exon 3 RF02148 Rfam MEST intronic transcript 1, antisense RNA conserved region 1 RF02149 Rfam MEST intronic transcript 1, antisense RNA conserved region 2 RF02150 Rfam MEST intronic transcript 1, antisense RNA conserved region 3 RF02151 Rfam MER1 repeat containing imprinted transcript 1 conserved region 1 RF02152 Rfam MER1 repeat containing imprinted transcript 1 conserved region 2 RF02153 Rfam Neighbour of BRCA1 gene 2 converved region RF02154 Rfam Non-protein coding RNA, upstream of F2R/PAR1 conserved region 1 RF02155 Rfam Non-protein coding RNA, upstream of F2R/PAR1 conserved region 2 RF02156 Rfam NPPA antisense RNA 1 conserved region 1 RF02157 Rfam NPPA antisense RNA 1 conserved region 2 RF02158 Rfam NPPA antisense RNA 1 conserved region 3 RF02159 Rfam Prostate androgen-regulated transcript 1 conserved region 1 RF02160 Rfam Prostate androgen-regulated transcript 1 conserved region 2 RF02161 Rfam Prostate androgen-regulated transcript 1 conserved region 3 RF02162 Rfam XIST RNA A repeat RF02163 Rfam Small nucleolar RNA sR-tMet RF02164 Rfam Pvt1 oncogene conserved region 1 RF02165 Rfam Pvt1 oncogene conserved region 2 RF02166 Rfam Pvt1 oncogene conserved region 3 RF02167 Rfam Pvt1 oncogene conserved region 4 RF02168 Rfam Pvt1 oncogene conserved region 5 RF02169 Rfam Pvt1 oncogene conserved region 6 RF02170 Rfam Pvt1 oncogene conserved region 7 RF02171 Rfam RFPL3 antisense RNA 1 conserved region 1 RF02172 Rfam RFPL3 antisense RNA 1 conserved region 2 RF02173 Rfam SMAD5 antisense RNA 1 conserved region 1 RF02174 Rfam SMAD5 antisense RNA 1 conserved region 2 RF02175 Rfam SMAD5 antisense RNA 1 conserved region 3 RF02176 Rfam SMAD5 antisense RNA 1 conserved region 4 RF02177 Rfam Smith-Magenis syndrome chromosome region, candidate 2 conserved region 1 RF02178 Rfam Smith-Magenis syndrome chromosome region, candidate 2 conserved region 2 RF02179 Rfam ST7 antisense RNA 1 conserved region 1 RF02180 Rfam ST7 antisense RNA 1 conserved region 2 RF02181 Rfam ST7 antisense RNA 2 conserved region 1 RF02182 Rfam ST7 antisense RNA 2 conserved region 2 RF02183 Rfam ST7 overlapping transcript 3 conserved region 1 RF02184 Rfam ST7 overlapping transcript 3 conserved region 2 RF02185 Rfam ST7 overlapping transcript 3 conserved region 3 RF02186 Rfam ST7 overlapping transcript 3 conserved region 4 RF02187 Rfam ST7 overlapping transcript 4 conserved region 1 RF02188 Rfam ST7 overlapping transcript 4 conserved region 2KST7-OT4_2 RF02189 Rfam ST7 overlapping transcript 4 conserved region 3 RF02190 Rfam ST7 overlapping transcript 4 conserved region 4 RF02191 Rfam T-cell leukemia/lymphoma 6 conserved region 1 RF02192 Rfam T-cell leukemia/lymphoma 6 conserved region 2 RF02193 Rfam T-cell leukemia/lymphoma 6 conserved region 3 RF02194 Rfam Bacterial antisene RNA HPnc0260 RF02195 Rfam TP53 target 1 conserved region 1 RF02196 Rfam TP53 target 1 conserved region 2 RF02197 Rfam TP73 antisense RNA 1 conserved region RF02198 Rfam TTC28 antisense RNA 1 conserved region 1 RF02199 Rfam TTC28 antisense RNA 1 conserved region 2 RF02200 Rfam TTC28 antisense RNA 1 conserved region 3 RF02201 Rfam TTC28 antisense RNA 1 conserved region 4 RF02202 Rfam Urothelial cancer associated 1 conserved region RF02203 Rfam WT1 antisense RNA conserved region 1 RF02204 Rfam WT1 antisense RNA conserved region 2 RF02205 Rfam WT1 antisense RNA conserved region 3 RF02206 Rfam WT1 antisense RNA conserved region 4 RF02207 Rfam WT1 antisense RNA conserved region 5 RF02208 Rfam WT1 antisense RNA conserved region 6 RF02209 Rfam WT1 antisense RNA conserved region 7 RF02210 Rfam WT1 antisense RNA conserved region 8 RF02211 Rfam ZFAT antisense RNA 1 conserved region 1 RF02212 Rfam ZFAT antisense RNA 1 conserved region 2 RF02213 Rfam ZFAT antisense RNA 1 conserved region 3 RF02214 Rfam microRNA mir-56 RF02215 Rfam ZNFX1 antisense RNA 1 conserved region 1 RF02216 Rfam ZNFX1 antisense RNA 1 conserved region 2 RF02217 Rfam ZNFX1 antisense RNA 1 conserved region 3 RF02218 Rfam ZNRD1 antisense RNA 1 conserved region 1 RF02219 Rfam ZNRD1 antisense RNA 1 conserved region 2 RF02220 Rfam ZNRD1 antisense RNA 1 conserved region 3 RF02221 Rfam sRNA-Xcc1 RF02222 Rfam Xanthomonas sRNA sX2 RF02223 Rfam Proteobacterial sRNA sX4 RF02224 Rfam Xanthomonadaceae sRNA sX5 RF02225 Rfam Proteobacterial sRNA sX6 RF02226 Rfam Xanthomonas sRNA sX7 RF02227 Rfam Proteobacterial sRNA sX8 RF02228 Rfam Xanthomonas sRNA sX9 RF02230 Rfam Proteobacterial sRNA sX11 RF02231 Rfam Xanthomonas sRNA sX12 RF02232 Rfam Xanthomonadaceae sRNA sX13 RF02233 Rfam Xanthomonas sRNA sX14/Xoo3 RF02234 Rfam Xanthomonadaceae sRNA sX15 RF02235 Rfam Xanthomonadaceae sRNA asX1 RF02236 Rfam Xanthomonas sRNA asX2 RF02237 Rfam Xanthomonas sRNA asX3 RF02238 Rfam Xanthomonas sRNA asX4/Xoo4 RF02239 Rfam Xanthomonas sRNA asX6 RF02240 Rfam Xanthomonadaceae sRNA Xoo1 RF02241 Rfam Xanthomonadaceae sRNA Xoo2 RF02242 Rfam Xanthomonadaceae sRNA Xoo5 RF02243 Rfam Proteobacterial sRNA Xoo8 RF02244 Rfam microRNA mir-785 RF02245 Rfam microRNA mir-788 RF02246 Rfam Six3os1 conserved region 1 RF02247 Rfam Six3os1 conserved region 2 RF02248 Rfam Six3os1 conserved region 3 RF02249 Rfam Six3os1 conserved region 4 RF02250 Rfam Six3os1 conserved region 5 RF02251 Rfam Six3os1 conserved region 6 RF02252 Rfam Six3os1 conserved region 7 RF02253 Rfam Iron response element II RF02254 Rfam microRNA mir-35 RF02255 Rfam Adaptive response 33 conserved region 1 RF02256 Rfam Adaptive response 33 conserved region 2 RF02257 Rfam Adaptive response 33 conserved region 3 RF02258 Rfam Adaptive response 33 conserved region 4 RF02259 Rfam Vax2os1 conserved region 1 RF02260 Rfam MAT2A 3'UTR stem loop A RF02261 Rfam MAT2A 3'UTR stem loop B RF02262 Rfam MAT2A 3'UTR stem loop C RF02263 Rfam MAT2A 3'UTR stem loop D RF02264 Rfam MAT2A 3'UTR stem loop E RF02265 Rfam MAT2A 3'UTR stem loop F RF02266 Rfam XIST 3' intron conserved motif RF02267 Rfam Vax2os1 conserved region 2 RF02268 Rfam MtlS RNA RF02269 Rfam Heliobacter pylori small RNA HPnc0580 RF02270 Rfam Neisseria sigma-E sRNA RF02271 Rfam TUC338 RF02272 Rfam Vax2os1 conserved region 3 RF00127 Rfam t44 RNA RF01960 Rfam Eukaryotic small subunit ribosomal RNA RF02274 Rfam AniS RF02277 Rfam Hammerhead ribozyme HH10 RF00177 Rfam Bacterial small subunit ribosomal RNA RF01959 Rfam Archaeal small subunit ribosomal RNA RF00005 Rfam tRNA