Description

An object of class "InfoDataFrame" that contains information on InterPro domains (InterPro). This data is prepared based on ftp://anonymous@ftp.ebi.ac.uk/pub/databases/interpro/Current/entry.list.

Usage

data(InterPro)

Value

an object of class InfoDataFrame. It has slots for data and dimLabels:

• data: a data.frame containing information about 11638 annotatable domains (in rows), with 3 columns ("id" for InterPro ID, and "level" always equals "InterPro", "description" for InterPro description)
• dimLabels: a character describing labels for rows and columns in data

References

Hunter et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res, 40(Database issue):D306-12.

Examples

# load data
data(InterPro)
InterPro

An object of S4 class 'InfoDataFrame'
  rowNames: IPR000003 IPR000006 IPR000008 ... IPR029784 IPR029785
    (11638 total)
  colNames: id level description

# retrieve the dimension
dim(InterPro)

[1] 11638     3

# retrieve names of columns
colNames(InterPro)

[1] "id"          "level"       "description"

# retrieve the first 5 rows of data
Data(InterPro)[1:5,]

                 id    level                                     description
IPR000003 IPR000003 InterPro                        Retinoid X receptor/HNF4
IPR000006 IPR000006 InterPro                     Metallothionein, vertebrate
IPR000008 IPR000008 InterPro                                       C2 domain
IPR000009 IPR000009 InterPro Protein phosphatase 2A, regulatory subunit PR55
IPR000010 IPR000010 InterPro              Proteinase inhibitor I25, cystatin

See also