Description

An object of class "InfoDataFrame" that contains information on SCOP domain families (fa).

Usage

data(SCOP.fa)

Value

an object of class InfoDataFrame. It has slots for data and dimLabels:

• data: a data.frame containing information about 2223 domains (in rows), with 3 columns ("id" for SCOP sunid, and "level" for SCOP level, "description" for SCOP description)
• dimLabels: a character describing labels for rows and columns in data

References

Morais et al. (2011) SUPERFAMILY 1.75 including a domain-centric gene ontology method. Nucleic Acids Res, 39(Database issue):D427-34.

Andreeva et al. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res, 36(Database issue):D419-425

Examples

# load data
data(SCOP.fa)
SCOP.fa

An object of S4 class 'InfoDataFrame'
  rowNames: 46459 46463 46532 ... 161271 161309 (4194 total)
  colNames: id level description

# retrieve the dimension
dim(SCOP.fa)

[1] 4194    3

# retrieve names of columns
colNames(SCOP.fa)

[1] "id"          "level"       "description"

# retrieve the first 5 rows of data
Data(SCOP.fa)[1:5,]

         id level
46459 46459    fa
46463 46463    fa
46532 46532    fa
46549 46549    fa
46553 46553    fa
                                                                           description
46459                                                             Truncated hemoglobin
46463                                                                          Globins
46532                                          Phycocyanin-like phycobilisome proteins
46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
46553                               Dihydropyrimidine dehydrogenase, N-terminal domain

See also